Jatropha Genome Database

JcCA0074951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0074951.10 + phase: 2 /pseudo
         (151 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011894001 assembled CDS                                       125   5e-30
GSVIVT01014391001 assembled CDS                                        60   5e-10
GSVIVT01011846001 assembled CDS                                        56   6e-09
GSVIVT01002243001 assembled CDS                                        50   5e-07

>GSVIVT01011894001 assembled CDS
          Length = 190

 Score =  125 bits (315), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 62/82 (75%), Positives = 63/82 (76%)

Query: 70  EACLLAGATKNAYHTKYRGMIYAQNFSCETLRKXXXXXXXXXXXXTMILNVYYYMYFSKA 129
           EACL+AGATKNAYHTKYRGMIYAQNFSCETLRK            TMILNVYYYMYFSKA
Sbjct: 109 EACLIAGATKNAYHTKYRGMIYAQNFSCETLRKGVFIAGAVFVVATMILNVYYYMYFSKA 168

Query: 130 TAPQAASKANRTSSNVGMAGYA 151
           T  QA  KANR SS VGM GYA
Sbjct: 169 TDTQAVRKANRASSTVGMTGYA 190


>GSVIVT01014391001 assembled CDS
          Length = 185

 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 70  EACLLAGATKNAYHTKYRGMIYAQNFSCETLRKXXXXXXXXXXXXTMILNVYYYMYFSKA 129
           E CLLAG+ +NAYHTKYR +      SCETLRK            T IL+  YY+ +SKA
Sbjct: 106 EICLLAGSVRNAYHTKYRTIFSEDPPSCETLRKGVFGAGAAFTFFTAILSELYYVCYSKA 165

Query: 130 TAPQAASKANRTSSNVGMAGYA 151
                A     T   VGM  Y+
Sbjct: 166 RGSFPAYGGRET--GVGMGTYS 185


>GSVIVT01011846001 assembled CDS
          Length = 193

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 27/33 (81%)

Query: 70  EACLLAGATKNAYHTKYRGMIYAQNFSCETLRK 102
           EACLLAG+ KNAYHTKYRG+   Q+ SC TLRK
Sbjct: 107 EACLLAGSAKNAYHTKYRGVFGGQDLSCATLRK 139


>GSVIVT01002243001 assembled CDS
          Length = 181

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 70  EACLLAGATKNAYHTKYRGMIYAQNFSCETLRKXXXXXXXXXXXXTMILNVYYYMYFSKA 129
           E CLLAG+ +NAYHTKY   +  +  SCETLRK            T IL+  YY+ +S A
Sbjct: 105 EVCLLAGSVRNAYHTKY--ALSQELSSCETLRKGVFGAGAAFIVFTGILSELYYVSYSNA 162

Query: 130 TAPQA 134
              QA
Sbjct: 163 NDGQA 167