Jatropha Genome Database

JcCA0074421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0074421.20 - phase: 0 /partial
         (131 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01005190001 assembled CDS                                       210   2e-55
GSVIVT01037657001 assembled CDS                                       203   1e-53
GSVIVT01030588001 assembled CDS                                       200   2e-52

>GSVIVT01005190001 assembled CDS
          Length = 918

 Score =  210 bits (534), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/111 (87%), Positives = 106/111 (95%)

Query: 20  AKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKTGEDADTLGLTGHERYSIDLPNSV 79
           AKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFK G+DA+TLGLTGHERY+IDLP+SV
Sbjct: 807 AKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGQDAETLGLTGHERYTIDLPSSV 866

Query: 80  SEIRPGQDVKVLTDNGKSFTCTLRFDTEVELAYFDHGGILQYVIRNLIHAK 130
           SEI+PGQD+ V+TDNGKSFTCT+RFDTEVELAYFDHGGILQY IRNLI  +
Sbjct: 867 SEIKPGQDITVVTDNGKSFTCTMRFDTEVELAYFDHGGILQYAIRNLIGGR 917


>GSVIVT01037657001 assembled CDS
          Length = 1009

 Score =  203 bits (517), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 95/109 (87%), Positives = 101/109 (92%)

Query: 20   AKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKTGEDADTLGLTGHERYSIDLPNSV 79
            AKGPML GVKAVIAKSFERIHRSNLVGMGIIPLCFK GEDADTLGLTGHERY+IDLP+ +
Sbjct: 900  AKGPMLQGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLGLTGHERYNIDLPSKI 959

Query: 80   SEIRPGQDVKVLTDNGKSFTCTLRFDTEVELAYFDHGGILQYVIRNLIH 128
            SEIRPGQDV V TDNGKSFTCT+RFDTEVEL YF+HGGIL Y IRNLI+
Sbjct: 960  SEIRPGQDVTVTTDNGKSFTCTVRFDTEVELEYFNHGGILPYAIRNLIN 1008


>GSVIVT01030588001 assembled CDS
          Length = 987

 Score =  200 bits (508), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 93/108 (86%), Positives = 100/108 (92%)

Query: 20  AKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKTGEDADTLGLTGHERYSIDLPNSV 79
           AKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFK GEDADTLGLTGHERY+IDLP+++
Sbjct: 878 AKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLTGHERYTIDLPSNI 937

Query: 80  SEIRPGQDVKVLTDNGKSFTCTLRFDTEVELAYFDHGGILQYVIRNLI 127
            EIRPGQD+ V T+ GKSF CT RFDTEVELAYF+HGGIL YVIRNLI
Sbjct: 938 DEIRPGQDITVTTNTGKSFICTARFDTEVELAYFNHGGILPYVIRNLI 985