Jatropha Genome Database

JcCA0074421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0074421.10 + phase: 1 /pseudo/partial
         (124 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01005191001 assembled CDS                                        87   1e-18
GSVIVT01008745001 assembled CDS                                        87   2e-18
GSVIVT01032563001 assembled CDS                                        69   4e-13
GSVIVT01017841001 assembled CDS                                        64   2e-11
GSVIVT01031675001 assembled CDS                                        60   2e-10
GSVIVT01037870001 assembled CDS                                        47   2e-06

>GSVIVT01005191001 assembled CDS
          Length = 288

 Score = 87.4 bits (215), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 42/43 (97%)

Query: 1   HGEGLQVLHYEVGQKYEPHFDYFNDEFNTRNGGQRIATLLMYL 43
           HGEGLQ+LHYEVGQKYEPH+DYF D++NT+NGGQR+AT+LMYL
Sbjct: 160 HGEGLQILHYEVGQKYEPHYDYFLDDYNTKNGGQRMATVLMYL 202


>GSVIVT01008745001 assembled CDS
          Length = 288

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 41/43 (95%)

Query: 1   HGEGLQVLHYEVGQKYEPHFDYFNDEFNTRNGGQRIATLLMYL 43
           HGEGLQVLHYEVGQKY+ H+DYF DEFNT+NGGQRIATLLMYL
Sbjct: 160 HGEGLQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRIATLLMYL 202


>GSVIVT01032563001 assembled CDS
          Length = 316

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 36/43 (83%)

Query: 1   HGEGLQVLHYEVGQKYEPHFDYFNDEFNTRNGGQRIATLLMYL 43
           +GE +Q+LHYE G+KYEPHFDYF+D+ N   GG RIAT+LMYL
Sbjct: 137 NGESIQILHYENGEKYEPHFDYFHDKVNQLLGGHRIATVLMYL 179


>GSVIVT01017841001 assembled CDS
          Length = 298

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 1   HGEGLQVLHYEVGQKYEPHFDYFNDEFNTRNGGQRIATLLMYL 43
           +GE +QVL YE GQKY+ H+DYF D+ N   GG RIAT+LMYL
Sbjct: 120 NGEDMQVLRYEPGQKYDAHYDYFVDKVNIARGGHRIATVLMYL 162


>GSVIVT01031675001 assembled CDS
          Length = 287

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 1   HGEGLQVLHYEVGQKYEPHFDYFNDEFNTRNGGQRIATLLMYL 43
           +GE +QVL Y+  Q Y+PH DYF+D FN + GGQR+AT+L+YL
Sbjct: 166 NGELIQVLRYKKSQFYKPHHDYFSDSFNLKRGGQRVATMLIYL 208


>GSVIVT01037870001 assembled CDS
          Length = 284

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 26/43 (60%)

Query: 1   HGEGLQVLHYEVGQKYEPHFDYFNDEFNTRNGGQRIATLLMYL 43
           HGE   +L YE+GQ+Y  H+D FN         QR+A+ L+YL
Sbjct: 160 HGEAFNILRYEIGQRYNSHYDAFNPAEYGPQTSQRVASFLLYL 202