Jatropha Genome Database

JcCA0074091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0074091.10 - phase: 0 /partial
         (207 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015772001 assembled CDS                                       205   1e-53

>GSVIVT01015772001 assembled CDS
          Length = 386

 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/195 (60%), Positives = 136/195 (69%), Gaps = 18/195 (9%)

Query: 7   NTNLGSHHGLLFLNAFKRSSQFCHTPQQIFGKRQLEVKRQRQCGQIFCESTSHYTTNANE 66
            +N  S   + F N  K SS  CH  +     ++ E           C     YT N   
Sbjct: 33  TSNFRSGSRVCFSNNAKISSYPCHDYRNRVKFKRFE-----------CRVEDSYTNN--- 78

Query: 67  GGKEEDIAKVTLVWRAIKLPIYSVALVPLTVGGAAAYLHTGVFSARRYFVLLASSILIIT 126
               ++I+K TL+WRAIKLPIYSVALVPLTVG AAAYL TG+FSAR+YF LLASS+LII 
Sbjct: 79  ----KEISKGTLIWRAIKLPIYSVALVPLTVGSAAAYLQTGLFSARQYFTLLASSVLIIA 134

Query: 127 WLNLSNDVYDFDTGADKNKKESVVNLVGSRSGTLFAAYLSLALGFLGLTRTSLGAGNVQA 186
           WLNLSNDVYDFDTGADKNKKESVVN+VGSR+GT  AAY  LALGF+GL+  S+ AGN +A
Sbjct: 135 WLNLSNDVYDFDTGADKNKKESVVNMVGSRTGTHAAAYALLALGFVGLSWASMVAGNFRA 194

Query: 187 ILLLACAVICGYIYQ 201
           ILLLACAV CGYIYQ
Sbjct: 195 ILLLACAVTCGYIYQ 209