Jatropha Genome Database

JcCA0074011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0074011.10 - phase: 0 /pseudo
         (768 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035560001 assembled CDS                                      1064   0.0  
GSVIVT01032958001 assembled CDS                                       356   2e-98

>GSVIVT01035560001 assembled CDS
          Length = 1006

 Score = 1064 bits (2751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/733 (72%), Positives = 601/733 (81%), Gaps = 28/733 (3%)

Query: 14  GGNDATEVRFSEFCKTGLCLDEDTCKEALQLFKETKHLLSA-NISSIGNG---------- 62
           GG  A E RF+EFCK GL LDE T  +A++LF+E+ HLLS  ++S+IGNG          
Sbjct: 13  GG--AVEARFTEFCKNGLQLDESTFAQAMKLFEESNHLLSTTSLSAIGNGPEDSERYWFA 70

Query: 63  ------TRLSEKXXXXXXXXXXXXGLTLCQILRCAKLNIVDFFKELPQYVVKAGPILSNM 116
                  RLSE             G  LCQILR +KLNIVDFFKELPQ++VK GPIL N+
Sbjct: 71  FILYSVKRLSEGTAENVQQGNDENGFNLCQILRVSKLNIVDFFKELPQFIVKVGPILGNL 130

Query: 117 YGADWENRLEAKELQANFVHLSILSRHYKRAYRELFLTSDANVDKQSAVSSETAYLSEYH 176
           YG DWE RLEAKELQANFVHLSILS++YKRAY E F TS +N+DKQS+V S + Y+S+YH
Sbjct: 131 YGPDWEKRLEAKELQANFVHLSILSKYYKRAYLEFFSTSGSNLDKQSSVISASGYVSDYH 190

Query: 177 RFGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAVLMIHVPVHCRNFNLNDSQWFVKKGDK 236
           RFGWLLFLALRVHAFSRFKDLVTCTNGLVS+LA+L++HVP+  R+F +N+   FVKKG+K
Sbjct: 191 RFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPISFRSFTINNYPRFVKKGNK 250

Query: 237 GVDLLASLCNKYDTSEDELRKTMEKTNNLIADLLKKKPRLAPECKNENLDDINPDGLIYY 296
           G+DLLASLC+ Y+TSEDE+RKTME+TN +I D+LKKKP LA ECK+ENL  I+PDGL+Y+
Sbjct: 251 GMDLLASLCDIYETSEDEVRKTMEQTNKVIVDILKKKPCLASECKSENLASIDPDGLVYF 310

Query: 297 EDLMEESSLQTSLSILEKDYDDAIRCKGELDERVFINDEDXXXXXXXXXXXAINVTGTKR 356
           EDLM+ESSL +S++ILEKDYD AIR KGELDERVFIN ED           A++++G KR
Sbjct: 311 EDLMDESSLSSSINILEKDYDAAIRNKGELDERVFINGEDSLLGSGSLSGGAMSISGAKR 370

Query: 357 KFDQMSSPTKTITSPLSCHQSPASHANGIFGSTNPKMAATPVSTAMTTAKWLRTVISPLP 416
           K D ++SP KTITSPLS ++SP     GI G  N KMA TPV+TAMTTAKWLRTVISPLP
Sbjct: 371 KIDSLASPAKTITSPLSPNRSP-----GILGGANSKMAPTPVTTAMTTAKWLRTVISPLP 425

Query: 417 SKPSAQLERFLASCDRDVTNDVIRRAQIMLEAIFPSSALGERCVTGSLQSTKLMDNIWAE 476
           SKPSA+LERFL SCD+DVT+DVIRRA ++LEAIFPS A GERCVTG   S  LMD+IWA+
Sbjct: 426 SKPSAELERFLTSCDKDVTSDVIRRANVILEAIFPSIAFGERCVTG---SASLMDSIWAQ 482

Query: 477 QRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTM 536
           QRR+EA+KLYYRVLEAMCTAEAQ+LHA NLTSLLTNERFHRCMLACSAELVLATHKTVTM
Sbjct: 483 QRRMEAMKLYYRVLEAMCTAEAQVLHANNLTSLLTNERFHRCMLACSAELVLATHKTVTM 542

Query: 537 LFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNS 596
           LFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNS
Sbjct: 543 LFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNS 602

Query: 597 LTVARPSLSAEINRLGLLAEPMPSLDAIAMHINFXXXXXXXXXXXQKHELCPGQNGDIRS 656
           L VAR +LSAE+NRLGLLAEPMPSLDAI+MHIN            QK E  PGQNGDIRS
Sbjct: 603 LIVARAALSAEVNRLGLLAEPMPSLDAISMHINASCGGLPPVPSLQKRESSPGQNGDIRS 662

Query: 657 PKRPCPDYRSVLVERNSFTSPVKDRLLAFSNLKSKL-PPPLQSAFASPTRPNPGGGGETC 715
           PKR CPDYRSVLVERNSFTSPVKDR LA +NLKSKL PPPLQSAFASPTRPNPG  GETC
Sbjct: 663 PKRVCPDYRSVLVERNSFTSPVKDRFLALNNLKSKLPPPPLQSAFASPTRPNPGREGETC 722

Query: 716 AETGINVFFSKVI 728
           AETGIN+FFSK+I
Sbjct: 723 AETGINIFFSKII 735


>GSVIVT01032958001 assembled CDS
          Length = 588

 Score =  356 bits (914), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 202/382 (52%), Positives = 248/382 (64%), Gaps = 46/382 (12%)

Query: 349 INVTGTKRKFDQMSSPTKTITSPLSCHQSPASHANGIFGSTNPKMAATPVSTAMTTAKWL 408
           +N+ G KRKF+ + SP  T +    C                            T A+WL
Sbjct: 1   MNICGYKRKFEAIVSPADTTSQLSPC----------------------------TPAQWL 32

Query: 409 RTVISPLPSKPSAQLERFLASCDRDVTNDVIRRAQIMLEAIFPSSALGERCVTGSLQSTK 468
           +TVI  LP+KPSA+LERF++SCD +VT+ VI RA I+L AIFP    G RC++  L ++ 
Sbjct: 33  QTVICSLPAKPSAELERFMSSCDGNVTDKVICRASIILAAIFPRGCNGNRCMSSGLHNSS 92

Query: 469 LMDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSAELVL 528
           LM++ W EQR+ EALKLYY+VLE++C +EAQ L   NLT LLTNERFHRCMLACSAELV 
Sbjct: 93  LMNSGWIEQRQEEALKLYYKVLESICESEAQKLQGRNLTQLLTNERFHRCMLACSAELVS 152

Query: 529 ATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWE 588
           A H  V MLFP VLER GITAFDLS+V ESFI+HE SLPREL+R+LNS+EE++LESMVW 
Sbjct: 153 AAHMGVRMLFPRVLERIGITAFDLSRVTESFIKHEGSLPRELKRYLNSMEEQMLESMVWG 212

Query: 589 KGSSMYNSLTVARPSLSAEINRLGLLAEPMPSLDAIAMHINFXXXXXXXXXXXQKHELCP 648
           KGSS+YNSL VARPSL+ EI RLGLLA+PMPSLDAIA   N                  P
Sbjct: 213 KGSSLYNSLIVARPSLAEEIRRLGLLAKPMPSLDAIAAD-NLLSYGGLPHP--------P 263

Query: 649 GQNGDIRSPKRPCPDYRSVLVERNSFTSPVKDRLLAFSN---LKSKLPPPLQSAFASPTR 705
           GQNG+ RS ++   +        NS   P+K+   A ++    K    PPL SAFASPT+
Sbjct: 264 GQNGNARSSEKVSSEL------HNSSALPMKEHSPALNDQKPRKPPPSPPLLSAFASPTQ 317

Query: 706 PNPGGGGETCAETGINVFFSKV 727
           PNPGG G TC +TGI + F KV
Sbjct: 318 PNPGGRGSTCLDTGIKLLFEKV 339