Jatropha Genome Database

JcCA0072641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0072641.10 + phase: 0 /partial
         (127 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012523001 assembled CDS                                        84   1e-17
GSVIVT01009198001 assembled CDS                                        56   5e-09

>GSVIVT01012523001 assembled CDS
          Length = 188

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 73/123 (59%), Gaps = 8/123 (6%)

Query: 7   GTLRDLTKGGKQISFDQNEM---GNIKPSTLERENPYANRDXXXXXXXXXXXXLDSDNSV 63
           GTLRDL+KG + I F Q+E+    +IKP T+ERE  Y N D            L+S N  
Sbjct: 57  GTLRDLSKGSRMIPFGQDELETSDDIKPVTMEREKAYGNHDELGSSEEMKPVPLESGNPT 116

Query: 64  --RPNEQELLETDETPTNPFPMHLENSSVNINDEDLQDTLDDLGNVSSSEFEIPGNFDDQ 121
             + NEQ+LLET     +  P+ ++NSS+N    D Q+  + L NVS ++FEIP NFD+Q
Sbjct: 117 TGQQNEQDLLETAVALVDHLPVPVDNSSIN---PDEQENTEVLANVSGTDFEIPTNFDEQ 173

Query: 122 VDI 124
           VD+
Sbjct: 174 VDV 176


>GSVIVT01009198001 assembled CDS
          Length = 324

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 20/127 (15%)

Query: 7   GTLRDLTKGGKQISFDQNEMG---NIKPSTLERENPYANRDXXXXXXXXXXXXLD-SDN- 61
           GTLRDL+KGG+ +S DQ E+G   ++KPS +E EN   ++D             + +DN 
Sbjct: 198 GTLRDLSKGGRNLSLDQIELGTPIDVKPSIMEGENFSGSQDEHITPEDPSKAVAERTDNP 257

Query: 62  SVRPNEQ------------ELLETDETPTNPFPMHLENSSVNINDEDLQDTLDDLGNVSS 109
           SV  +E+            +L ET +  ++  PM + +SS N++D   Q+TL +L N S 
Sbjct: 258 SVNADEEVMSSGVYPSSFTDLHETADDLSHTLPMGIVHSSGNLDD---QETLVELANASE 314

Query: 110 SEFEIPG 116
           +E +IPG
Sbjct: 315 TEMDIPG 321