Jatropha Genome Database

JcCA0072081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0072081.10 - phase: 0 
         (180 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037590001 assembled CDS                                       230   2e-61

>GSVIVT01037590001 assembled CDS
          Length = 246

 Score =  230 bits (587), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/153 (83%), Positives = 136/153 (88%)

Query: 28  ERDYLLSQVTAAKEELLSKRRKQLKKDTASKIKSLVDEGKYEKQYEKSEEFQRELKLKVR 87
           ER+YLLSQV AAKEEL + R+KQLKKD ASKIKSLVDEGKYE++YE+SEEFQ++LKLKVR
Sbjct: 94  EREYLLSQVNAAKEELRAMRKKQLKKDNASKIKSLVDEGKYEQEYERSEEFQKQLKLKVR 153

Query: 88  EILTEQEWRRRKMQMRISXXXXXXXXXXXXQKEMWKRKREHEEQWEGTREQRVSSWRDFM 147
           E+LTEQEWRRRKMQMRIS             KEMWKRKREHEEQWEGTREQRVSSWRDFM
Sbjct: 154 ELLTEQEWRRRKMQMRISEEEGRLKKDEEDTKEMWKRKREHEEQWEGTREQRVSSWRDFM 213

Query: 148 KTGKKGKKGEIRPPKLKTEDPNKSYVQRPVKRG 180
           KTGKKGKKGEIRPPKLKTEDPNKSYVQRPVKRG
Sbjct: 214 KTGKKGKKGEIRPPKLKTEDPNKSYVQRPVKRG 246