Jatropha Genome Database

JcCA0071981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071981.20 - phase: 2 /partial
         (283 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024772001 assembled CDS                                       450   e-127
GSVIVT01025279001 assembled CDS                                        90   2e-18
GSVIVT01025457001 assembled CDS                                        77   1e-14

>GSVIVT01024772001 assembled CDS
          Length = 509

 Score =  450 bits (1158), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/282 (76%), Positives = 245/282 (86%), Gaps = 1/282 (0%)

Query: 1   LIIADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLQSLNCKPMV 60
           LIIADELDYLIT+DR VLHDLFMLTT PFS CILIGV+NAIDLADRFLP+LQSLNCKPMV
Sbjct: 229 LIIADELDYLITRDRTVLHDLFMLTTLPFSSCILIGVSNAIDLADRFLPKLQSLNCKPMV 288

Query: 61  VTFRAYSKEQILRILQERLMALPWTTFHPPALELCARKVAAASGDMRKALCVCRSAIEIL 120
           VTFRAYSK+QIL+ILQ+RLMALP+  F P ALELCARKVAAASGDMRKAL VCRS +EI+
Sbjct: 289 VTFRAYSKDQILKILQQRLMALPFPVFQPQALELCARKVAAASGDMRKALSVCRSVLEIV 348

Query: 121 EAELRESTGNLNSFAVDKELSHQQTAPAGEFFEKQDYSIVRIDHMAVALSKAYRSPIVDT 180
           EAELRES  +L S + +K    QQT PA +    Q+ +IVR+DHMA ALSK +RSPIVDT
Sbjct: 349 EAELRESVNSL-SVSSEKGAFDQQTLPALDSLTNQEINIVRVDHMATALSKTFRSPIVDT 407

Query: 181 IQSLPQHQQIILCAAVKFFRGGKKDTIVGELNKYYIDVCKSTMIPPVGISEFLSMCRVLN 240
           IQSLPQHQQIILC+AVK FRGGKKDT VGELNK Y+D+CKS ++PP+GI E  SMCRVL+
Sbjct: 408 IQSLPQHQQIILCSAVKLFRGGKKDTTVGELNKSYVDICKSVLVPPIGILELSSMCRVLS 467

Query: 241 DQGLLKLGQSRDDKLRRLMLKVDAADIIFALQGVRFFRNCLQ 282
           DQGLLKLGQ+R+DKL+R+ LKVD ADI FALQG+RFFRNCLQ
Sbjct: 468 DQGLLKLGQAREDKLKRVTLKVDEADIAFALQGIRFFRNCLQ 509


>GSVIVT01025279001 assembled CDS
          Length = 979

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 129/263 (49%), Gaps = 23/263 (8%)

Query: 11  ITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLQSLNCKPMVVTFRAYSKEQ 70
           +T++++VL+++    T P S+ I+IG+AN +DL ++ LPR+ S       + F  Y+ +Q
Sbjct: 727 VTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISS-RMGIQRLCFGPYNYQQ 785

Query: 71  ILRILQERLMALPWTTFHPPALELCARKVAAASGDMRKALCVCRSAIEILEAELRESTGN 130
           +  I+  RL  +    F   A+E  +RKVAA SGD R+AL +CR A E+ +  +++ T  
Sbjct: 786 LQEIISSRLKGI--DAFERQAIEFASRKVAAISGDARRALEICRRAAELADYHIKKLTSP 843

Query: 131 LNSFAVDKELSHQQTAPAGEFFEKQDYSIVRIDHMAVALSKAYRSPIVDTIQSLPQHQQI 190
            +S +  K L                   V +  +  A+ + +++P +  ++S  +  +I
Sbjct: 844 PDSSSEGKAL-------------------VGMAEVEAAIQEMFQAPQIQVMKSSSKLSKI 884

Query: 191 ILCAAV-KFFRGGKKDTIVGELNKYYIDVCKSTMIPPVGISEFLSMCRVLNDQGLLKLGQ 249
            L A V + ++ G  +T   +L+     +C S      G    L +   L +  ++    
Sbjct: 885 FLVAMVHELYQTGMAETTFKKLSVTVSCLCTSNGEKFPGWDTLLRVGCKLGECRIILCEA 944

Query: 250 SRDDKLRRLMLKVDAADIIFALQ 272
               +L++L L   + D+ FAL+
Sbjct: 945 GAKHRLQKLQLNFPSDDVAFALK 967


>GSVIVT01025457001 assembled CDS
          Length = 604

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 106/213 (49%), Gaps = 23/213 (10%)

Query: 11  ITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLQSLNCKPMVVTFRAYSKEQ 70
           +T++++VL+++    T P S+ I+IG+AN +DL ++ LPR+ S       + F  Y+ +Q
Sbjct: 370 VTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISS-RMGIQRLCFGPYNYQQ 428

Query: 71  ILRILQERLMALPWTTFHPPALELCARKVAAASGDMRKALCVCRSAIEILEAELRESTGN 130
           +  I+  RL  +    F   A+E  +R V A SGD R+AL +CR A E            
Sbjct: 429 LQEIIPSRLQGI--DAFERQAIEFASRTVTAISGDARRALEICRRAAE------------ 474

Query: 131 LNSFAVDKELSHQQTAPAGEFFEKQDYSIVRIDHMAVALSKAYRSPIVDTIQSLPQHQQI 190
           L  + + K  S   ++  G+       ++V +  +  A+ + +++P +  ++S  +  +I
Sbjct: 475 LADYHIKKLASPPDSSSEGK-------ALVGMAEVEAAIQEMFQAPHIQVMKSSSKLSKI 527

Query: 191 ILCAAVK-FFRGGKKDTIVGELNKYYIDVCKST 222
            L A V   ++ G  +T   +L+     +C S 
Sbjct: 528 FLVAMVHGLYQTGMVETTFEKLSVTVSCLCTSN 560