Jatropha Genome Database

JcCA0071981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071981.10 + phase: 0 /pseudo/partial
         (250 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032857001 assembled CDS                                       294   3e-80
GSVIVT01016313001 assembled CDS                                       292   1e-79
GSVIVT01024771001 assembled CDS                                       257   5e-69

>GSVIVT01032857001 assembled CDS
          Length = 292

 Score =  294 bits (752), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 140/169 (82%), Positives = 161/169 (95%)

Query: 41  VGAPARVGLIAPIDVVVPPGPTGLDPSMTSFFQALNIPTKINKGSVEIVTAVDLIKKGEK 100
           VGAPARVGL+APIDV+VPPG TGLDPS TSFFQ LNIPTKINKG+VEI+T V+LIKKG+K
Sbjct: 82  VGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDK 141

Query: 101 VGSSESALLAKLQIRPFSYGLIVFSVYDNGSVFSPEVLDLTEDDLVERFVNGVSMVTSLS 160
           VGSSE+ALLAKL IRPFSYGL+V SVYDNGSVFSPEVLDLTE+DL+E+F  GVSMVTSLS
Sbjct: 142 VGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEEDLIEKFAAGVSMVTSLS 201

Query: 161 LSISFPTLAAAPHMFLNAYKNVLSVSVATEYTFPQAEQVKEFLEDPSKF 209
           L+IS+PTLAAAPHMF+NAYKNVL+V+VATEY+FPQA++VKE+L+DPSKF
Sbjct: 202 LAISYPTLAAAPHMFINAYKNVLAVAVATEYSFPQADKVKEYLKDPSKF 250


>GSVIVT01016313001 assembled CDS
          Length = 292

 Score =  292 bits (747), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/169 (82%), Positives = 161/169 (95%)

Query: 41  VGAPARVGLIAPIDVVVPPGPTGLDPSMTSFFQALNIPTKINKGSVEIVTAVDLIKKGEK 100
           VGAPARVGL+APIDV+VPPG TGLDPS TSFFQ LNIPTKINKG+VEI+T V+LI+KG+K
Sbjct: 82  VGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDK 141

Query: 101 VGSSESALLAKLQIRPFSYGLIVFSVYDNGSVFSPEVLDLTEDDLVERFVNGVSMVTSLS 160
           VGSSE+ALLAKL IRPFSYGL+V SVYDNGSVFSPEVLDLTE+DL+E+F  GVSMVTSLS
Sbjct: 142 VGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEEDLMEKFAAGVSMVTSLS 201

Query: 161 LSISFPTLAAAPHMFLNAYKNVLSVSVATEYTFPQAEQVKEFLEDPSKF 209
           L+IS+PTLAAAPHMF+NAYKNVLSV+VAT+Y+FPQA++VKEFL+DPSKF
Sbjct: 202 LAISYPTLAAAPHMFVNAYKNVLSVAVATDYSFPQADKVKEFLKDPSKF 250


>GSVIVT01024771001 assembled CDS
          Length = 245

 Score =  257 bits (656), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 124/169 (73%), Positives = 147/169 (86%)

Query: 41  VGAPARVGLIAPIDVVVPPGPTGLDPSMTSFFQALNIPTKINKGSVEIVTAVDLIKKGEK 100
           VGAPAR G++APIDVV+ PG TGLDP++TSFFQ LNIPTKINKG+VEIV  V L+KKG+K
Sbjct: 34  VGAPARAGVVAPIDVVIQPGSTGLDPALTSFFQVLNIPTKINKGAVEIVVPVQLVKKGDK 93

Query: 101 VGSSESALLAKLQIRPFSYGLIVFSVYDNGSVFSPEVLDLTEDDLVERFVNGVSMVTSLS 160
           VGSSE+ALLAKL  + FSYGL+V SV DNGSVFSP+VLDLT+DDL E+F  GVSM  SLS
Sbjct: 94  VGSSEAALLAKLGKKSFSYGLVVLSVSDNGSVFSPKVLDLTDDDLAEKFSAGVSMKASLS 153

Query: 161 LSISFPTLAAAPHMFLNAYKNVLSVSVATEYTFPQAEQVKEFLEDPSKF 209
           L+IS+PTLAAA HMF+NA  NVL+V+V  EY+FPQA+QVKE+L+DPSKF
Sbjct: 154 LAISYPTLAAALHMFINACNNVLTVAVVAEYSFPQAQQVKEYLKDPSKF 202