Jatropha Genome Database

JcCA0071791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071791.10 - phase: 0 /pseudo
         (411 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028237001 assembled CDS                                       412   e-115

>GSVIVT01028237001 assembled CDS
          Length = 438

 Score =  412 bits (1060), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/439 (53%), Positives = 290/439 (66%), Gaps = 29/439 (6%)

Query: 1   MDSSVVREFIKKEVPDWDDEVIATARFKAFSGQRSDWESKYLFWRDLILKVARHLGHLAI 60
           M+S  VREFI++EV DW++E IATARFKAFSGQRSDWE++Y FWRDLILKVARH   L I
Sbjct: 1   MESEAVREFIRREVKDWEEEAIATARFKAFSGQRSDWEARYQFWRDLILKVARHFHLLFI 60

Query: 61  RPSQVKNEWFNRGGLTPLCLDHVLFIMYSEGDIIRSVDLVDPRNGGLSQFFRKVRNLVVR 120
             SQVK +WFNRGGLTPLCLDHVLF+MY+EGDIIRSVDLVDP +G LSQ FRKV++++VR
Sbjct: 61  SSSQVKKDWFNRGGLTPLCLDHVLFLMYNEGDIIRSVDLVDPTSGRLSQLFRKVKHMMVR 120

Query: 121 STTSPEVMLEDCVILTVLLREKATEVI-----------------KFYLKVIGHLHALLLX 163
           S TS EVM ED +IL  LL++K  EV+                 KF     G   A  + 
Sbjct: 121 S-TSAEVMFEDHLILLPLLKDKTVEVVKVLSESQWTSSCVITMKKFQDICGGTREASAVL 179

Query: 164 RSFRTCVEHQM----KHLQFXVIYLDSGKHAISRFIRRNXXSLHLIWTTEKLQKQVDVID 219
                C + Q     K      + +     A+S     +   LHL WTTE LQ+Q+DVID
Sbjct: 180 SYLSGCGKAQYLSISKKELIEGVKVSLSAAAVSGTTSLDLDVLHLTWTTENLQQQLDVID 239

Query: 220 QRYEISRKLALASLKSGNKKMALRHAREMKLASENREKCTSLLNRVDGVLNIIMNAESTK 279
           QR E+S+K ALASL SGNKK+ALRHA+ +KLASE+REKC S LNRV+ VL++I NAESTK
Sbjct: 240 QRCEVSKKAALASLNSGNKKVALRHAKALKLASESREKCISFLNRVEEVLSLIANAESTK 299

Query: 280 KVTEAIQIGAQAMKQNKITXXXXXXXXXXXXXSIDSQKQVEKAL-ESTPSYTGXXXXXXX 338
           KV+EAIQIGA+A+++N+I              SIDSQKQVE+AL ES PSY         
Sbjct: 300 KVSEAIQIGARAIQENRIDVEEVQRCLQELGDSIDSQKQVEEALAESDPSYVDIEDEDIE 359

Query: 339 XXFKKLEVEIGSENLQSHVPRIGVSSISGERDNWGPSDSLSGAFSNLKLQDASARESM-- 396
             F+KLE+E+G++NLQ  V + GV + +GE +    S SL  A S+LKL D + R S   
Sbjct: 360 EEFRKLELELGNQNLQILVSQAGVDTAAGETEASESSKSLCDALSDLKLADNATRGSTIL 419

Query: 397 ----NQRTNESKNVTLEAA 411
               ++R N SKN+ LEAA
Sbjct: 420 NSTGSKRDNISKNLKLEAA 438