Jatropha Genome Database

JcCA0071331.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071331.20 - phase: 0 /partial
         (76 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000780001 assembled CDS                                       131   5e-32
GSVIVT01004085001 assembled CDS                                       118   5e-28

>GSVIVT01000780001 assembled CDS
          Length = 318

 Score =  131 bits (330), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 61/76 (80%), Positives = 66/76 (86%)

Query: 1   KVLAAHGAAKVSAYVTHGVFPNRSWERFTQKSDGSGSAFAYFWITDSCPLTVKSIANKPP 60
           KVLAAHGA+KVSAYVTH VFP RSWERF  K+DGS  AF YFW TDSCPLTVK+I N+ P
Sbjct: 243 KVLAAHGASKVSAYVTHSVFPKRSWERFIHKNDGSEKAFTYFWTTDSCPLTVKAIGNRAP 302

Query: 61  FEVLSLAGSIADALQI 76
           FE+LSLAGSIADALQI
Sbjct: 303 FEILSLAGSIADALQI 318


>GSVIVT01004085001 assembled CDS
          Length = 393

 Score =  118 bits (296), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 62/77 (80%), Gaps = 1/77 (1%)

Query: 1   KVLAAHGAAKVSAYVTHGVFPNRSWERFTQKSDGS-GSAFAYFWITDSCPLTVKSIANKP 59
           KVLA+HGAAK+SAYVTHG+FPNRSW+RF +   G   +   YFWITDSCPLTVK + NKP
Sbjct: 317 KVLASHGAAKISAYVTHGIFPNRSWQRFGEDKGGCPANGLTYFWITDSCPLTVKEVKNKP 376

Query: 60  PFEVLSLAGSIADALQI 76
           PFEVLSLA SIA  LQI
Sbjct: 377 PFEVLSLASSIAATLQI 393