Jatropha Genome Database

JcCA0071111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071111.10 - phase: 0 /partial/short
         (46 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027922001 assembled CDS                                        60   2e-10
GSVIVT01029978001 assembled CDS                                        57   2e-09

>GSVIVT01027922001 assembled CDS
          Length = 508

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 35/49 (71%), Gaps = 3/49 (6%)

Query: 1   MAMTLKILARAAEKTQLIPGENDWDNVDDPLHF---FPGAFGIFKREFG 46
           M MT KILARA+EK QL PGEN W NVD  +      PG+FGIFK+EFG
Sbjct: 66  MTMTEKILARASEKPQLSPGENVWVNVDLLMTHDVCGPGSFGIFKKEFG 114


>GSVIVT01029978001 assembled CDS
          Length = 528

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/49 (59%), Positives = 35/49 (71%), Gaps = 3/49 (6%)

Query: 1   MAMTLKILARAAEKTQLIPGENDWDNVDDPLHF---FPGAFGIFKREFG 46
           M MT KILARA++K QL PGEN W +VD  +      PG+FGIFK+EFG
Sbjct: 66  MTMTEKILARASQKPQLSPGENVWVDVDILMTHDVCGPGSFGIFKKEFG 114