Jatropha Genome Database
- JcCA0071061.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0071061.10 - phase: 2 /TE
(1395 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01012382001 assembled CDS 233 4e-61
GSVIVT01028343001 assembled CDS 202 1e-51
GSVIVT01000641001 assembled CDS 170 5e-42
GSVIVT01031724001 assembled CDS 146 5e-35
GSVIVT01013341001 assembled CDS 120 4e-27
GSVIVT01015960001 assembled CDS 105 1e-22
GSVIVT01013655001 assembled CDS 105 2e-22
GSVIVT01009548001 assembled CDS 103 4e-22
GSVIVT01010555001 assembled CDS 94 6e-19
GSVIVT01024357001 assembled CDS 71 4e-12
GSVIVT01011334001 assembled CDS 69 1e-11
GSVIVT01028612001 assembled CDS 64 4e-10
GSVIVT01017026001 assembled CDS 61 4e-09
GSVIVT01018138001 assembled CDS 58 3e-08
GSVIVT01014104001 assembled CDS 57 9e-08
>GSVIVT01012382001 assembled CDS
Length = 952
Score = 233 bits (595), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 105/202 (51%), Positives = 146/202 (72%)
Query: 1194 VSVLSQFMSSPTVIHWEALGQILCYLKGNPGRGLLYSNHRHLNIECFSDADWAGSKVDRR 1253
VS++SQ+M +PTV+H + +IL YLK GRG++ + H +I FSD+DWAG+ +DRR
Sbjct: 751 VSLVSQYMHAPTVVHLCMVKRILRYLKKTIGRGIVMRRNGHTDIIGFSDSDWAGNTIDRR 810
Query: 1254 SISGYCVFVGGNLISWRSKKQNXXXXXXXXXXYRAMAQSACELIWIRQLLEEIGFKSSLP 1313
S +GYC+FVGGNL+SW+SKKQ YRAMA ++CE++W++ LL ++GF + P
Sbjct: 811 STTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKNLLTDLGFSPTSP 870
Query: 1314 AKLWCDNQAALHIASNPVFHERTKHIEIDCRFIREKIQQGVISTGHVKTSEQLGDIFTKA 1373
KL+CDNQAA+HIA+NPVFHERTKHIE+DC FIR+++Q VI T ++++S+QL D FTK
Sbjct: 871 MKLFCDNQAAMHIAANPVFHERTKHIEVDCHFIRQQVQSKVIQTHYIRSSDQLADAFTKV 930
Query: 1374 LNGPRVDYLCNKLGMINIYAPT 1395
L+ L KLG I+ AP
Sbjct: 931 LSSTVFHRLMFKLGSIDPLAPA 952
>GSVIVT01028343001 assembled CDS
Length = 2295
Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 89/141 (63%), Positives = 107/141 (75%)
Query: 1251 DRRSISGYCVFVGGNLISWRSKKQNXXXXXXXXXXYRAMAQSACELIWIRQLLEEIGFKS 1310
DRRS SGYCVF+GGNLISW+SKKQ+ YRAMA + CELIW+R LL+E+ F
Sbjct: 1466 DRRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFGK 1525
Query: 1311 SLPAKLWCDNQAALHIASNPVFHERTKHIEIDCRFIREKIQQGVISTGHVKTSEQLGDIF 1370
KL CDNQAALHIASNPVFHERTKHIE+DC FIREKI G ++T V +++QL DIF
Sbjct: 1526 DEQMKLICDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADIF 1585
Query: 1371 TKALNGPRVDYLCNKLGMINI 1391
TK+L GPR+ Y+CNKLG ++
Sbjct: 1586 TKSLRGPRIKYICNKLGAYDL 1606
>GSVIVT01000641001 assembled CDS
Length = 947
Score = 170 bits (430), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 125/207 (60%)
Query: 1169 DPEMYRRLVGKLNYLTVTRPDIAYSVSVLSQFMSSPTVIHWEALGQILCYLKGNPGRGLL 1228
D +Y+++VG L YLT TRPDI +SVS++S++M +PT +H+ A +I YL+G GL
Sbjct: 232 DSIIYKQIVGSLMYLTATRPDIMHSVSLISRYMENPTELHFLAAKKICRYLQGTKDFGLF 291
Query: 1229 YSNHRHLNIECFSDADWAGSKVDRRSISGYCVFVGGNLISWRSKKQNXXXXXXXXXXYRA 1288
Y + ++ F+D+D+AG + +RRS SGY +G +SW SKKQ + A
Sbjct: 292 YKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEAEFVA 351
Query: 1289 MAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQAALHIASNPVFHERTKHIEIDCRFIRE 1348
AC+ IW+R++LEE+ K ++CDN + + ++ NPV H R+KHI++ F+R+
Sbjct: 352 ATVCACQAIWLRKILEELHLKQVGATTIFCDNSSTIKLSKNPVLHGRSKHIDVKYYFLRD 411
Query: 1349 KIQQGVISTGHVKTSEQLGDIFTKALN 1375
GVI + ++ Q+ DIFTK L
Sbjct: 412 LSNDGVIDLVYCRSENQVADIFTKPLK 438
>GSVIVT01031724001 assembled CDS
Length = 1135
Score = 146 bits (369), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 105/174 (60%), Gaps = 1/174 (0%)
Query: 1134 YVLDLLKETGKLGAKPCSAPMTPNLQLSIG-GELFDDPEMYRRLVGKLNYLTVTRPDIAY 1192
Y+ DLL+ G +K ++PM LSI G F+DP +YR LVG L Y T+TRPDIAY
Sbjct: 950 YICDLLQRAGLSESKLVTSPMAVGHVLSIADGTRFEDPTLYRSLVGALQYCTITRPDIAY 1009
Query: 1193 SVSVLSQFMSSPTVIHWEALGQILCYLKGNPGRGLLYSNHRHLNIECFSDADWAGSKVDR 1252
+++ QFM +PT H +A+ ++L YLKG+ GL + L++ ++DAD A DR
Sbjct: 1010 TINKFFQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADGASCPDDR 1069
Query: 1253 RSISGYCVFVGGNLISWRSKKQNXXXXXXXXXXYRAMAQSACELIWIRQLLEEI 1306
RS +GYC+F GNLISW + KQ YR +A + EL WI+ LL+E+
Sbjct: 1070 RSTNGYCIFFRGNLISWSASKQKVVSRSSIESKYRGLANATIELTWIQSLLKEL 1123
>GSVIVT01013341001 assembled CDS
Length = 503
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 69/106 (65%)
Query: 1201 MSSPTVIHWEALGQILCYLKGNPGRGLLYSNHRHLNIECFSDADWAGSKVDRRSISGYCV 1260
M SP H + +IL YLKG P +GL + H IE F+DADWAGS DRRS SGYC
Sbjct: 1 MHSPYEAHMNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCT 60
Query: 1261 FVGGNLISWRSKKQNXXXXXXXXXXYRAMAQSACELIWIRQLLEEI 1306
FV GNLI+WRSKKQN +R++A CE++WI+++LEE+
Sbjct: 61 FVFGNLITWRSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEEL 106
>GSVIVT01015960001 assembled CDS
Length = 1205
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 63/87 (72%)
Query: 1297 IWIRQLLEEIGFKSSLPAKLWCDNQAALHIASNPVFHERTKHIEIDCRFIREKIQQGVIS 1356
+WIR+LLEE+ S P KL+CDN+A + +A NPV H+RTKH+E+D FI+EKI G++
Sbjct: 1 MWIRRLLEELKMTGSSPMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGLVC 60
Query: 1357 TGHVKTSEQLGDIFTKALNGPRVDYLC 1383
++ T EQ+ D+FTK L+ + D+LC
Sbjct: 61 MTYIPTEEQVADVFTKGLHKRQFDFLC 87
>GSVIVT01013655001 assembled CDS
Length = 4396
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 75/136 (55%)
Query: 1193 SVSVLSQFMSSPTVIHWEALGQILCYLKGNPGRGLLYSNHRHLNIECFSDADWAGSKVDR 1252
+++ LSQFM PT HW A+ ++L YL G G+ L + FSD+DWAG+K D
Sbjct: 4254 TMNKLSQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDF 4313
Query: 1253 RSISGYCVFVGGNLISWRSKKQNXXXXXXXXXXYRAMAQSACELIWIRQLLEEIGFKSSL 1312
S S Y +++G N ISW SKKQ YR++A +A E+ WI LL E+G
Sbjct: 4314 TSTSAYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQ 4373
Query: 1313 PAKLWCDNQAALHIAS 1328
++CDN A H+ +
Sbjct: 4374 QPVIYCDNVGATHLCA 4389
>GSVIVT01009548001 assembled CDS
Length = 849
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 3/205 (1%)
Query: 1173 YRRLVGKLNYLTV-TRPDIAYSVSVLSQFMSSPTVIHWEALGQILCYLKGNPGRGLLYSN 1231
Y +G L Y RP+I + V+VL +++S+ HW A +++ YL+ L+Y
Sbjct: 596 YASAIGSLMYAQACIRPNIVFIVNVLGRYLSNLGQYHWVAAKKVMRYLQRTNDFMLVYRR 655
Query: 1232 HRHLNIECFSDADWAGSKVDRRSISGYCVFVGGNLISWRSKKQNXXXXXXXXXXYRAMAQ 1291
+L + +S++D+ G D +S SGY + G ISW+S KQ+ + A
Sbjct: 656 VDNLEVVGYSNSDFNGCSDDCKSTSGYIFMLTGGAISWKSVKQSLIAFSTMYAKFVACYG 715
Query: 1292 SACELIWIRQLLEEIGFKSSL--PAKLWCDNQAALHIASNPVFHERTKHIEIDCRFIREK 1349
++ +++W+R+L+ E+ S+ P ++CDN A + + N +KH+EI +++
Sbjct: 716 ASSQVVWLRKLISELQVVDSIFRPIVIYCDNNATVFYSKNNKISTSSKHMEIKYLIVKDL 775
Query: 1350 IQQGVISTGHVKTSEQLGDIFTKAL 1374
+++ I H++T L D TK L
Sbjct: 776 VKKEDIVIKHIRTESMLADPLTKGL 800
>GSVIVT01010555001 assembled CDS
Length = 147
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 993 LDVKNAFLYGDLQEEVYMEQPPGFVAQGELGKVCKLRKSLYGLKQSPRAWFGRFCNVVHQ 1052
+DVKNAFL GDL EEVYM+ PPG E KVC LR++LYGLKQ+PRAWF +F + + +
Sbjct: 1 MDVKNAFLNGDLSEEVYMQPPPGLSV--ESNKVCHLRRALYGLKQAPRAWFAKFSSTIFR 58
Query: 1053 FGMQKSTSDHSVFFRSTNTG 1072
G S D ++F R T+ G
Sbjct: 59 LGYTASPYDSALFLRRTDKG 78
>GSVIVT01024357001 assembled CDS
Length = 851
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 62/102 (60%), Gaps = 7/102 (6%)
Query: 639 FWADAVSTACFLINRMPS-SMLNGAI--PYSVLFPSKLLFPVKPRIFGCTCFVRDVRPQV 695
FW +AV+T +L+NR P+ ++LN + +S PS F ++FGC C+ + + +
Sbjct: 546 FWVEAVNTVVYLLNRCPTKALLNKTLIEAWSGRNPSVRHF----KVFGCLCYSQVPKERR 601
Query: 696 SKLDTKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVDVTFFE 737
SKLD S +CIF+GYS KGYR ++ ++ +IS V F+E
Sbjct: 602 SKLDETSEKCIFMGYSSQSKGYRLYNLKTNKLIISRYVIFYE 643
>GSVIVT01011334001 assembled CDS
Length = 640
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 1043 FGRFCNVVHQFGMQKSTSDHSVFFRSTNTGXXXXXXXXXXXXXTGSD-SAGITSLKSFLQ 1101
F F VV FG SDH++F + T G D I LKS
Sbjct: 11 FDHFTKVVKGFGYSWCHSDHTLFVKHTVKGRTAIIIVYVGDIILTKDHEEEIGKLKSIFA 70
Query: 1102 TQFQTKDLGLLKYFLGIEVSRCKRGIFLSQRKYVLDLLKE 1141
+F+ KDLG LKYF G+E++R GI +SQ KYVLDLL E
Sbjct: 71 HEFEIKDLGNLKYFFGMEITRSNMGIVVSQCKYVLDLLTE 110
>GSVIVT01028612001 assembled CDS
Length = 3048
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 636 PXTFWADAVSTACFLINRMPSSMLNGAIP---YSVLFPSKLLFPVKPRIFGCTCFVRDVR 692
P TFW +AV+ ++NR P+ + P + L PS F R+FGC V
Sbjct: 638 PKTFWPEAVNWTVHVLNRSPTFAVQNKTPEEAWGKLKPSVDYF----RVFGCLSHVHVPD 693
Query: 693 PQVSKLDTKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVDVTFFEN 738
+ +KLD KS C+ LG S K YR + P + +IS DV F E+
Sbjct: 694 SKRTKLDDKSFSCVLLGVSEESKAYRLYDPISQKIIISRDVVFEED 739
>GSVIVT01017026001 assembled CDS
Length = 1273
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 9/83 (10%)
Query: 639 FWADAVSTACFLINRMPSSMLNGAIPYSVLF---PSKLLF-PVKPRIFGCTCFVRDVRPQ 694
FW DA STA ++INR+P+ +L G P+ +L+ P F P R++ C +RD P
Sbjct: 1191 FWVDAFSTATYIINRLPTPLLGGKSPFELLYGYSPHYENFHPFGCRVYPC---LRDYMP- 1246
Query: 695 VSKLDTKSLRCIFLGYSWHQKGY 717
+KL +S+ CIFLGYS KG+
Sbjct: 1247 -NKLSPRSIPCIFLGYSPSHKGF 1268
>GSVIVT01018138001 assembled CDS
Length = 98
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%)
Query: 1053 FGMQKSTSDHSVFFRSTNTGXXXXXXXXXXXXXTGSDSAGITSLKSFLQTQFQTKDLGLL 1112
FG + SD S+F R T + T SD+ ITSL + L ++F KDLG +
Sbjct: 16 FGFVSTKSDQSLFLRFTPSHITYVFVYVDDILVTSSDTTAITSLIAQLNSKFSLKDLGEV 75
Query: 1113 KYFLGIEVSRCKRGIFLSQRKYV 1135
YFL I+VS G+ LSQ KY+
Sbjct: 76 HYFLVIQVSYTNNGLHLSQTKYI 98
>GSVIVT01014104001 assembled CDS
Length = 1354
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 636 PXTFWADAVSTACFLINRMPSSMLNGAIPYSVLFPSKLLFPVKP-----RIFGCTCFVRD 690
P + W +A+ TA +++NR+PS A+P + P +L KP I+GC R
Sbjct: 996 PISLWGEALKTAMYILNRVPSK----AVPKT---PFELWTGRKPSLRHIHIWGCPAEARI 1048
Query: 691 VRPQVSKLDTKSLRCIFLGYSWHQKGYRCFSPDLD-RYLISVDVTFFEN 738
P KLD++++ F+GY KGYR + P+ R + + + F EN
Sbjct: 1049 YNPHEKKLDSRTVSGYFIGYPDKSKGYRFYCPNHSVRIVETGNARFLEN 1097