Jatropha Genome Database

JcCA0070381.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0070381.20 - phase: 0 
         (189 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023970001 assembled CDS                                        47   4e-06

>GSVIVT01023970001 assembled CDS
          Length = 226

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 14/138 (10%)

Query: 1   MSLWAQLPPEFLQVIAEKHTNYVDYYVCTRAVCKSWYAAIQKRXXXXXXXXXXXXXXXXX 60
           M+ W+QLP + L +IA++   + D  +C R+VC SW+A +  R                 
Sbjct: 1   MARWSQLPKDLLLLIAQRLNTHFDL-LCLRSVCSSWHACVPSRPHPLPSRFPILPTNGTS 59

Query: 61  XXXXDHRGFYSMSNDKTYRLELPEAFEKRCCGSSHGWLIMVEE-TPTI-FLLNPLTRTRI 118
                  G Y +S      L LPE+  +   GS   WLI VEE  P +  L+NPL+  + 
Sbjct: 60  W------GLY-LSRRTILCLGLPESHCQPTIGS---WLIKVEEDVPDMAHLVNPLSTFQF 109

Query: 119 E-LPSYDYRTYKFVAYKL 135
           + LP    +T+ F  +++
Sbjct: 110 KHLPPNFPKTFDFSRFRV 127