Jatropha Genome Database

JcCA0068161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0068161.10 + phase: 0 /pseudo/partial
         (291 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028056001 assembled CDS                                       494   e-140
GSVIVT01031185001 assembled CDS                                       482   e-136

>GSVIVT01028056001 assembled CDS
          Length = 494

 Score =  494 bits (1271), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 231/254 (90%), Positives = 243/254 (95%)

Query: 23  LRFASWRLYSTAFREERDTFGPIQVPSDKLWGAQTQRSLQNFEIGGEREQMPEPIIRAFG 82
           LR+   R  ST+FREE+DTFGPI VPSDKLWGAQTQRSLQNF+IGGEREQMPEPIIRAFG
Sbjct: 22  LRYMCLRSLSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGEREQMPEPIIRAFG 81

Query: 83  ILKKCAAKVNMEYGLDPSIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVI 142
           ILKKCAAKVNMEYGLDPSIGKAIMQAAQEV+EGKLNDHFPLV+WQTGSGTQSNMNANEVI
Sbjct: 82  ILKKCAAKVNMEYGLDPSIGKAIMQAAQEVSEGKLNDHFPLVIWQTGSGTQSNMNANEVI 141

Query: 143 ANRAAEILGHKRGGKFVHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLIPNLKNLHTTL 202
           ANRAAEILGH+RG K+VHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLIP+LK+L T L
Sbjct: 142 ANRAAEILGHQRGEKYVHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLIPSLKHLETAL 201

Query: 203 HSKSIEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRIMCTLPRMYQLAQGGTA 262
           HSKSIEFKDI+KIGRTHTQDATPLTLGQEFSGY TQVKYGIDR+ CTLPRMYQLAQGGTA
Sbjct: 202 HSKSIEFKDIIKIGRTHTQDATPLTLGQEFSGYYTQVKYGIDRVTCTLPRMYQLAQGGTA 261

Query: 263 VGTGLNTKKGFDVK 276
           VGTGLNTKKGFDVK
Sbjct: 262 VGTGLNTKKGFDVK 275


>GSVIVT01031185001 assembled CDS
          Length = 496

 Score =  482 bits (1240), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 226/255 (88%), Positives = 238/255 (93%), Gaps = 1/255 (0%)

Query: 23  LRFASWRLYSTAFREERDTFGPIQVPSDKLWGAQTQRSLQNFEIGGEREQMPEPIIRAFG 82
           LR+   R +ST+FREE+DT G + VP DKLWGAQTQRSLQNFEIGGE E+MPEPIIRAFG
Sbjct: 23  LRYDCLRAFSTSFREEKDTLGTVLVPDDKLWGAQTQRSLQNFEIGGESERMPEPIIRAFG 82

Query: 83  ILKKCAAKVNMEYGLDPSIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVI 142
           ILKKCAAKVNMEYGLDPSIGKAIMQAAQEVAEGKLNDHFPLV+WQTGSGTQSNMNANEVI
Sbjct: 83  ILKKCAAKVNMEYGLDPSIGKAIMQAAQEVAEGKLNDHFPLVIWQTGSGTQSNMNANEVI 142

Query: 143 ANRAAEILGHKRGGKFVHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLIPNLKNLHTTL 202
           ANRAAEILGHKRG KFVHPNDHVNRSQSSNDTFPTVMHIAA  EINSR IP LK LHT+L
Sbjct: 143 ANRAAEILGHKRGEKFVHPNDHVNRSQSSNDTFPTVMHIAAGVEINSRFIPKLKQLHTSL 202

Query: 203 HSKSIEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRIMCTLPRMYQ-LAQGGT 261
           HSKS+EFKDI+KIGRTHTQDATPLTLGQEFSGY+TQVKYGIDR+MCTLPRMYQ LAQGG 
Sbjct: 203 HSKSLEFKDIIKIGRTHTQDATPLTLGQEFSGYSTQVKYGIDRVMCTLPRMYQYLAQGGM 262

Query: 262 AVGTGLNTKKGFDVK 276
           AVGTGLNTKKGFDVK
Sbjct: 263 AVGTGLNTKKGFDVK 277