Jatropha Genome Database

JcCA0066791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066791.10 + phase: 1 /TE/partial
         (1652 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004252001 assembled CDS                                        80   7e-15
GSVIVT01037358001 assembled CDS                                        79   1e-14
GSVIVT01004123001 assembled CDS                                        77   8e-14
GSVIVT01001301001 assembled CDS                                        62   2e-09
GSVIVT01004860001 assembled CDS                                        60   8e-09
GSVIVT01003937001 assembled CDS                                        55   3e-07

>GSVIVT01004252001 assembled CDS
          Length = 533

 Score = 80.5 bits (197), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 103/225 (45%), Gaps = 6/225 (2%)

Query: 1209 AKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYLGVPLYGR-SSVSQYQSIIQKVEXXX 1267
            AKS +     +  +  L ++  LG  + +    YLG+PL  +  +++ +  +  ++    
Sbjct: 1    AKSEVIPVGEVEDIEMLAVE--LGCKVGTLPSVYLGLPLGAKHKAMAMWDGVEARMRKRL 58

Query: 1268 XXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKM 1327
                       G+  LIK++++SLP Y ++   +P  +   L++L R+F WG      K+
Sbjct: 59   ALWKRQYLSKGGRITLIKSTLASLPIYQLSFFRMPKLVVKRLEKLQRDFLWGGGSMERKI 118

Query: 1328 HLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKY---CLGH 1384
            HL+ W  +   +  GGL  R   L N  LLGK  W+    ++    +V+ +KY     G 
Sbjct: 119  HLINWEVVCTQKESGGLGIRKIDLLNKALLGKWIWRFAFEENFFWRKVVGVKYGQLGFGW 178

Query: 1385 SCPPAVQVSDSSTWKGIIRSFNTLQSHVRWRVGNGQQISXWYDSW 1429
                A        W+ I++  +    ++ ++VG G ++S W D W
Sbjct: 179  RTKEARGTFGVGVWRDILKDSSWCWDNIEFKVGKGTKVSFWTDHW 223


>GSVIVT01037358001 assembled CDS
          Length = 2456

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 1279 GKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKP 1338
            G+  LI++ ++ +P Y ++   +P+S+   ++RL R+F W    E  + HLV W+ +  P
Sbjct: 867  GRITLIQSCLTHMPCYFLSLFKIPTSVVAKIERLQRDFLWSGIEEGKRNHLVSWDVVCNP 926

Query: 1339 RXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQV-LSL--KYCLGHSCPPAVQVSDS 1395
            +  GGL F    L N+ LLGK  W+ L   S L  QV LS+   +  G      V+ S  
Sbjct: 927  KAKGGLGFGKISLRNLALLGKWLWRYLREGSALWHQVILSIYGSHSNGWDANTLVRWSHR 986

Query: 1396 STWKGIIRSFNTLQSHVRWRVGNGQQISXWYDSW 1429
              WK I + F       R+ VGNG++I  W D W
Sbjct: 987  CPWKAIAQVFQEFSMFTRFVVGNGERILLWEDLW 1020


>GSVIVT01004123001 assembled CDS
          Length = 386

 Score = 77.0 bits (188), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 3/159 (1%)

Query: 1280 KEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKPR 1339
            +  LI++++S+LP Y+M+   LPS +   L+++ R+F WG      K HLV W  +   +
Sbjct: 74   RTTLIRSTLSNLPIYLMSLLCLPSVVRRRLEKIQRDFLWGGGNLERKPHLVRWEVVCLSK 133

Query: 1340 XFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPPAVQVSDS---S 1396
              GGL  ++  + N  LL K  W+       L  QV+  KY        + +V ++    
Sbjct: 134  KKGGLGVKNLSILNKALLAKWNWRFANEREALWNQVIRGKYGEERGGWSSREVREAHGLG 193

Query: 1397 TWKGIIRSFNTLQSHVRWRVGNGQQISXWYDSWLSMGPL 1435
             WKGI  ++  + + + + VGNG+++  W D W    PL
Sbjct: 194  LWKGIRMNWELVSNRLVFIVGNGRRVRFWRDKWCGDSPL 232


>GSVIVT01001301001 assembled CDS
          Length = 325

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 13/188 (6%)

Query: 1203 SQTTNLAKSRIYFS--KSIAHVVWL--------RIQQLLGVAIASDLGKYLGVPLYGRSS 1252
            + T    K+++YF     + H+ WL        +  +L  V       K LG P     S
Sbjct: 101  NPTRKQKKNKLYFPFGYRLEHLPWLMEYHLFLYKRFKLCLVFEKYQEKKTLGAPY---RS 157

Query: 1253 VSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRL 1312
            ++ +  + +++               G+  LI ++++S+P Y M+   +P  +   L+R+
Sbjct: 158  LTVWDGVEERMRKKSARWKSQYISKGGRITLIWSTLASMPIYFMSMLSMPRKVRLRLERI 217

Query: 1313 ARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLX 1372
             R+F WG      K+HLV W+ +   +  GGL  +S  + N TLL K  W+  +      
Sbjct: 218  QRDFLWGGGALERKLHLVRWDLVCLEKCNGGLGVKSLSILNKTLLCKWSWRFAIEREAFW 277

Query: 1373 VQVLSLKY 1380
             QV+  KY
Sbjct: 278  NQVIRGKY 285


>GSVIVT01004860001 assembled CDS
          Length = 1243

 Score = 60.1 bits (144), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 1301 LPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKL 1360
            +P S+   L++L R+F W  +    K HLV W  +   +  GGL  R     N  LLGK 
Sbjct: 1    MPKSVARRLEKLQRDFLWEGANGGKKAHLVKWEVVCADKEKGGLGLRKLACLNKALLGKW 60

Query: 1361 GWKLLVNDSDLXVQVLSLKY---CLGHSCPPAVQVSDSSTWKGIIRSFNTLQSHVRWRVG 1417
             W+      D+  +VL  KY     G     A  V     WK I++ F     ++ ++VG
Sbjct: 61   IWRFARAKEDIWKKVLEAKYGQEDFGWRTRKANGVFGVGVWKEILKEFAWCWENMVFKVG 120

Query: 1418 NGQQISXWYDSW 1429
             G +I  W D W
Sbjct: 121  KGNKIRFWIDPW 132


>GSVIVT01003937001 assembled CDS
          Length = 354

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 3/148 (2%)

Query: 1301 LPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKL 1360
            +P+ +   ++RL R+F W    E  + +LV W+ + K +   GL F    L N+ LLGK 
Sbjct: 11   IPALVAAKIERLQRDFLWSGVGEGKRDYLVSWDVVCKLKAKRGLGFGKIVLRNVALLGKW 70

Query: 1361 GWKLLVNDSDLXVQV-LSL--KYCLGHSCPPAVQVSDSSTWKGIIRSFNTLQSHVRWRVG 1417
             W+     S L  QV LS+   +  G      V+      WK I + F       R+ VG
Sbjct: 71   LWRYPRKGSALWHQVILSIYGSHSNGWDANTIVKWLHRCPWKAIAQVFQEFSKFTRFVVG 130

Query: 1418 NGQQISXWYDSWLSMGPLVDLLETLHEV 1445
            + ++I  W D W    PL      L  V
Sbjct: 131  DEERIRFWEDLWWGDQPLESQYPRLFRV 158