Jatropha Genome Database

JcCA0066701.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066701.20 + phase: 1 /TE/partial
         (800 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003599001 assembled CDS                                        70   6e-12
GSVIVT01004252001 assembled CDS                                        54   2e-07

>GSVIVT01003599001 assembled CDS
          Length = 801

 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 43/65 (66%)

Query: 657 SILLDYEARSGQAVNFQKSGTLFSPCVSQHIVDDISNILGVRGSIGDSFYLGLPSLIGRD 716
           +I   YE+ SGQA+NFQKSG  FS  VS    D ISNILGV   +    YLGLPSLIG+ 
Sbjct: 3   TIFAKYESNSGQAINFQKSGIFFSRNVSSLDRDFISNILGVSTPLNTGRYLGLPSLIGKS 62

Query: 717 KKQIF 721
           K+ +F
Sbjct: 63  KRAVF 67


>GSVIVT01004252001 assembled CDS
          Length = 533

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%)

Query: 688 VDDISNI---LGVRGSIGDSFYLGLPSLIGRDKKQIFSFIKDRLWKKLNSWNNRFLSRVG 744
           V+DI  +   LG +     S YLGLP         ++  ++ R+ K+L  W  ++LS+ G
Sbjct: 11  VEDIEMLAVELGCKVGTLPSVYLGLPLGAKHKAMAMWDGVEARMRKRLALWKRQYLSKGG 70

Query: 745 REVLIKSVAQAIPAYCMLVFLLPSTLCHELQVIMNCYWWNGKKEQGRGINWLSWE 799
           R  LIKS   ++P Y +  F +P  +   L+ +   + W G   + R I+ ++WE
Sbjct: 71  RITLIKSTLASLPIYQLSFFRMPKLVVKRLEKLQRDFLWGGGSME-RKIHLINWE 124