Jatropha Genome Database

JcCA0066671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066671.20 + phase: 0 /pseudo
         (501 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01006780001 assembled CDS                                        64   2e-10
GSVIVT01026490001 assembled CDS                                        60   3e-09
GSVIVT01030186001 assembled CDS                                        52   6e-07

>GSVIVT01006780001 assembled CDS
          Length = 630

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 117/289 (40%), Gaps = 31/289 (10%)

Query: 30  IINPSRLGYLRHFDACRNSHKELLGALAERWWDTTNTFHFSWGEMTMTPVDFSVITGIPF 89
           +++ +  GYLR   A  +    L+ AL ERW   TNTFH + GEMT+T  D + + G+  
Sbjct: 57  LVHKAGFGYLRLIPAI-SLDNPLISALVERWRRETNTFHLNVGEMTVTLEDVAYLLGLAI 115

Query: 90  GIRPIELYDDWRTEVSPDRMVELIGIDLPRIVGPGSATPALSVSRRWL---YLQAPG--- 143
              P+       T    D + E +   L +    GS +  + V   WL   + Q P    
Sbjct: 116 DGEPVMGV----TYTMCDTICEKL---LGKAPDSGSTSGGM-VKLSWLKESFSQCPEDAP 167

Query: 144 IYARHRRGELTASQVARFTLLLMFASTFWSNRKERFNPSI-LKSLENLAHLTEYDWAGAI 202
           +    RR         R  LL +  ST +S       P + L   EN    + Y W  A 
Sbjct: 168 MEEIERR--------TRAYLLYLVGSTIFSTTTGNKVPVMYLPLFENFDQASNYAWGAAA 219

Query: 203 LSRMYDDMCDLS-RSHCKLSGTYYFWEIWAFEYFPYTRPEQIQADLGLGLVPLAWRWYRT 261
           LS +Y  + + S +S   +SG     + W++ +    RP   Q  + +   PL  +W   
Sbjct: 220 LSFLYRALGNASLKSQSTVSGCLTLLQCWSYYHLDIGRPRLNQDSIHVSF-PLVLKWKGK 278

Query: 262 NLHTSRHRHSLKDLRIFFDTLKWG--RWPPIYRAGFKLIPISSDQMTCF 308
               + +R  L   R   D+LK     W P      ++IP   D  +C 
Sbjct: 279 QSGPTANR-DLIFYRKALDSLKSSDVEWLPYINIDSRIIP--EDIKSCL 324


>GSVIVT01026490001 assembled CDS
          Length = 773

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 18/196 (9%)

Query: 52  LLGALAERWWDTTNTFHFSWGEMTMTPVDFSVITGIPFGIRPIELYDD--WRTEVSPDRM 109
           L+ AL ERW   T+TFH + GE T+T  D +V+ G+     P+    D  W     P+  
Sbjct: 109 LITALVERWRQETHTFHLAVGESTITLQDTAVLLGLRVHGDPVTGTTDVQW-----PNLC 163

Query: 110 VELIGIDLPRIVGPGSATPALSVS-RRWLYLQAPGIYARHRRGELTASQVARFTLLLMFA 168
            EL+G    R  G      AL +S  R  +LQ P         +L   Q AR  +L +  
Sbjct: 164 EELLGR---RPDGNSLQGSALKLSWLRMHFLQPPS-----DADDLIVQQYARAYILALIG 215

Query: 169 STFWSNRKERFNPSI-LKSLENLAHLTEYDWAGAILSRMYDDMCDLSRSHC-KLSGTYYF 226
              ++++       I L  L +        W  A L+ +Y ++C  S++   +++G    
Sbjct: 216 GALFADKSGSDVQLIFLPLLRDFVAAGRLSWGSATLAHLYRELCRASKAGASEIAGPLIL 275

Query: 227 WEIWAFEYFPYTRPEQ 242
            ++WA+E     RPE+
Sbjct: 276 LQLWAWERLHVGRPEK 291


>GSVIVT01030186001 assembled CDS
          Length = 277

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 88/220 (40%), Gaps = 24/220 (10%)

Query: 49  HKELLGALAERWWDTTNTFHFSWGEMTMTPVDFSVITGIPFGIRPIELYDDWRTEVSPDR 108
           +K LL  L ERW    + F    GE+T+T +D ++I G+      + L +D      P  
Sbjct: 63  NKNLLVELMERWSCEKHAFILLPGEITITLMDVALILGLRVMGDSVVLKED-----EPFS 117

Query: 109 MVELIGIDLPRIVGPGSATPALSVSRRWLYLQAPGIYARHRRGELTASQVARFTLLLMFA 168
                  DL +  G   +   + VS     L++         GE+     AR  LL  F 
Sbjct: 118 -------DLEKEYGATISNRKIMVSSIENKLESI--------GEIANDDFARAFLLFTFG 162

Query: 169 STFWSNRKERFNPSILKSLENLAHLTEYDWAGAILSRMYDDMCDLSRSHCKLSGT-YYFW 227
           +  + N   + +   L  L++L ++ +  W  A+L  +   +      + +  G+   F 
Sbjct: 163 TFLFPNANGKVDSRYLSVLKDLDNVHQLAWGAAVLEDIIKWLSKKKEMNVQYVGSCLIFL 222

Query: 228 EIWAFEYFPYTRPEQIQADLGLGLVPLAWRWYRTNLHTSR 267
           +IW++E+    RP  +   L     P A RW     H  +
Sbjct: 223 QIWSYEHIDIARPSLLDCYLTF---PRACRWENCRSHQRK 259