Jatropha Genome Database

JcCA0066671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066671.10 - phase: 2 /partial
         (78 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038094001 assembled CDS                                       126   2e-30

>GSVIVT01038094001 assembled CDS
          Length = 370

 Score =  126 bits (317), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/65 (87%), Positives = 61/65 (93%)

Query: 1   FFNSHDREFHVASLPYKPDFKVMPEGWDGTIKDLDEVHYEISMKEDEMLYQEFVQKMNFN 60
           FFNSHDREFHVASLPYKPDFKVMPEGWDGT +D DEVH+EIS KEDEMLYQEFVQKMNFN
Sbjct: 236 FFNSHDREFHVASLPYKPDFKVMPEGWDGTTRDPDEVHHEISQKEDEMLYQEFVQKMNFN 295

Query: 61  KMKVS 65
           K K++
Sbjct: 296 KKKMA 300