Jatropha Genome Database

JcCA0066651.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066651.20 + phase: 0 /pseudo
         (368 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025534001 assembled CDS                                       277   6e-75
GSVIVT01025535001 assembled CDS                                       167   5e-42
GSVIVT01003253001 assembled CDS                                        83   2e-16
GSVIVT01028118001 assembled CDS                                        80   1e-15
GSVIVT01024207001 assembled CDS                                        73   3e-13
GSVIVT01021426001 assembled CDS                                        67   1e-11
GSVIVT01022631001 assembled CDS                                        65   4e-11
GSVIVT01001119001 assembled CDS                                        62   6e-10

>GSVIVT01025534001 assembled CDS
          Length = 225

 Score =  277 bits (708), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 136/226 (60%), Positives = 169/226 (74%), Gaps = 7/226 (3%)

Query: 1   MYGSKGESTSRKKHHRPMTDASNSMEILAVYFPTNDFSVDEDKLMLISDLIHFFSTSLGQ 60
           MYG    +  R       TD ++  ++LA YFP    S ++ +L + S LIHFFS+   Q
Sbjct: 1   MYGETMSAKCR------FTD-TDITKVLATYFPEIQLSANDPRLHVTSQLIHFFSSPSAQ 53

Query: 61  DLASQVKEENGAFFLPIDFEQFRKICDVEEFYVILEEKPKVALSCLGAAVHKVLSTKCEE 120
              SQVK ++  F L +DF+QF KICD+E+FY  L+ KPK AL C+ AAVHKVLST  ++
Sbjct: 54  QFVSQVKNDDDIFSLSLDFKQFHKICDLEDFYAALDTKPKEALLCMSAAVHKVLSTNWDD 113

Query: 121 NILQVGAKINIRLHNYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEK 180
           N L+ G KINIRLHN+PE+MIALKNLK+AYIDKLVSVRGTVVK STV+PLVVQM+F C K
Sbjct: 114 NRLEDGVKINIRLHNHPETMIALKNLKSAYIDKLVSVRGTVVKASTVKPLVVQMTFACVK 173

Query: 181 CKSNIARIFPDGKFSPPTICNLNGCKSRTFHPIRSSAQAVDFQKIR 226
           C++NI RIF DGKFSPP++C L+GCKSRTF PIRS+AQ +DFQKIR
Sbjct: 174 CQTNILRIFHDGKFSPPSVCTLHGCKSRTFTPIRSTAQPIDFQKIR 219


>GSVIVT01025535001 assembled CDS
          Length = 553

 Score =  167 bits (424), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 80/96 (83%), Positives = 85/96 (88%)

Query: 238 EGRVPRTVECELTEDLVDACIPGDVVTVTGIIRTINNYVDIGGGKLKGKNQGFYYLYLEG 297
           +GRVPRTVECELTEDLVDACIPGDVVTVTGIIR INNY+DIGGGK K KNQG +YLYLE 
Sbjct: 8   KGRVPRTVECELTEDLVDACIPGDVVTVTGIIRQINNYMDIGGGKSKNKNQGLFYLYLEA 67

Query: 298 VSIKNSKSQSTSFDFQDSKSNARATELSDLFSFSPR 333
           VSIKNSKSQ  S D QDS ++ARATEL DLFSFSPR
Sbjct: 68  VSIKNSKSQYISEDLQDSNADARATELLDLFSFSPR 103


>GSVIVT01003253001 assembled CDS
          Length = 822

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 4/145 (2%)

Query: 129 INIRLHNYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARI 188
           IN+   N P  +  L++L  A + KLVS+ G V + S VRP ++Q +F C +C S I  +
Sbjct: 107 INVAFFNIP-LLKRLRDLTTAEVGKLVSITGVVTRTSEVRPELLQGTFKCLECGSVIKNV 165

Query: 189 FPDGKFSPPTICNLNGCKSRT-FHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVEC 247
               K++ P IC    C +RT +  +R  ++  D+Q++R+QE   S++   G +PR+++ 
Sbjct: 166 EQQFKYTEPVICMNATCANRTKWALVRQESKFADWQRVRMQET--SKEIPAGSLPRSLDV 223

Query: 248 ELTEDLVDACIPGDVVTVTGIIRTI 272
            L  ++V+    GD V  TG +  I
Sbjct: 224 ILRHEIVEQARAGDTVIFTGTVVVI 248


>GSVIVT01028118001 assembled CDS
          Length = 718

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 22/212 (10%)

Query: 138 ESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNI-----ARIFPDG 192
           E    ++ +KA+YI +LV + G V + S V+PL+    + CE C   I     AR+F   
Sbjct: 138 ERPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPL 197

Query: 193 KFSPPTICNLNGCKSRTFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVECELTED 252
              P T C  N  K      +R+S + + FQ+ +IQEL  +E   +G +PRT+   L  +
Sbjct: 198 FECPSTRCQTNRTKGNIILQLRAS-KFLKFQEAKIQEL--AEHVPKGHIPRTMTVHLRGE 254

Query: 253 LVDACIPGDVVTVTGIIRTINNYVDIGGGKLKGKNQGFYY-LYLEGVSIKNSKSQSTSFD 311
           L     PGDVV ++GI      ++ I     +    G     YLE +S+ + K +   ++
Sbjct: 255 LTRKVAPGDVVELSGI------FLPIPYTGFRAMRAGLVADTYLEAMSVTHFKKKYEEYE 308

Query: 312 FQ--DSKSNARATELSDLF-----SFSPRGFG 336
            +  + +  AR  E  D++     S +P  FG
Sbjct: 309 LRRDEEEQIARLAEDGDIYNKLARSLAPEIFG 340


>GSVIVT01024207001 assembled CDS
          Length = 834

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 5/150 (3%)

Query: 129 INIRLHNYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARI 188
           I  R+ N   S  +++NL  + I+K+VS++G +++ S++ P + +  F C  C+     I
Sbjct: 217 IQARIFNLKTS-TSMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAVFRCLVCRHYSDPI 275

Query: 189 FPD-GKFSPPTICNLNGCKSR-TFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVE 246
             D G+ + PT C    C ++ +   I +  +  D Q +R+QE    +D  EG  P TV 
Sbjct: 276 VVDRGRINEPTTCGRPECLAKNSMTLIHNRCRFADKQIVRLQET--PDDIPEGGTPHTVS 333

Query: 247 CELTEDLVDACIPGDVVTVTGIIRTINNYV 276
             + + LVDA  PGD V VTGI R ++  V
Sbjct: 334 LLMHDKLVDAGKPGDRVEVTGIYRAMSVRV 363


>GSVIVT01021426001 assembled CDS
          Length = 776

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 34/211 (16%)

Query: 144 KNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPDGKFSPPTICNLN 203
           ++L +++I  +V V G V K S VRP VV+    C    +   R + D       I +  
Sbjct: 110 RDLLSSFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPSSGNFTTREYRD-------ITSNM 162

Query: 204 GCKSRTFHPIRSSAQAV-----------DFQKIRIQELLRSEDHEEGRVPRTVECELTED 252
           G  + + +P R     +           D Q + +QE+   E+   G++PRTV+  + +D
Sbjct: 163 GLPTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQEV--PENSAPGQLPRTVDVIVEDD 220

Query: 253 LVDACIPGDVVTVTGIIRTINNYVDIGGGKLKGKNQGFY--YLYLEGVSIKNSKSQS--- 307
           LVD+C PGD V + GI + I        GK KG   G +   L    VS+ N ++ +   
Sbjct: 221 LVDSCKPGDRVAIVGIYKAIP-------GKSKGSVNGVFRTVLIANNVSLLNKEANTPIY 273

Query: 308 TSFDFQDSKSNARATELSDLF--SFSPRGFG 336
           T  D +  KS A   +  DL   S +P  +G
Sbjct: 274 TPEDLKHIKSIAERDDTLDLLGNSLAPSIYG 304


>GSVIVT01022631001 assembled CDS
          Length = 665

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 74/138 (53%), Gaps = 7/138 (5%)

Query: 136 YPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPD---- 191
           +PE+  ++  ++  +   L++++GTV++   ++ +  +  ++C KCK +I +++P+    
Sbjct: 110 FPETFPSIGRVRVKHHGILLTLKGTVIRSGGIKMIEGERKYECRKCK-HIFKVYPELETR 168

Query: 192 GKFSPPTICNLNGCKSRTFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVECELTE 251
                P+ C    C    F  +  S    D+Q+I+IQE ++      G +PR++   L +
Sbjct: 169 NAILLPSSCPSQKCAGTNFQLVEDSIIRHDYQEIKIQESVQVLG--VGAIPRSIPVILQD 226

Query: 252 DLVDACIPGDVVTVTGII 269
           DLVD    GD + VTGI+
Sbjct: 227 DLVDIVKAGDDIIVTGIL 244


>GSVIVT01001119001 assembled CDS
          Length = 954

 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 18/200 (9%)

Query: 75  LPIDFEQFRKICDVEEFYVILEEKPKVALSCLGAAVHKVLSTKCEENILQVGAKINIRLH 134
           L ID++QF  I       + L + P+  L  +   V K +      N   +  KI +R+ 
Sbjct: 274 LEIDYKQFIYIH--PNIAIWLADAPQSVLEVM-EDVAKNVVFDLHPNYKNIHQKIYVRIT 330

Query: 135 NYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPDGKF 194
           N P     ++N++  +++ ++ + G V + S V P + Q+ +DC KC   +   F +  +
Sbjct: 331 NLP-VYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGMILGPFFQNS-Y 388

Query: 195 SPPTICNLNGCKSRTFHPIRSSAQAV---DFQKIRIQE---LLRSEDHEEGRVPRTVECE 248
           S   + +   C+S+   P   + +     ++QK+ +QE   ++ +     GR+PR  E  
Sbjct: 389 SEVKVGSCPECQSKG--PFTVNIEQTIYRNYQKLTLQESPGIVPA-----GRLPRYKEVI 441

Query: 249 LTEDLVDACIPGDVVTVTGI 268
           L  DL+D   PG+ + VTGI
Sbjct: 442 LLNDLIDCARPGEEIEVTGI 461