Jatropha Genome Database

JcCA0066621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066621.10 + phase: 2 /partial
         (58 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035449001 assembled CDS                                        95   6e-21

>GSVIVT01035449001 assembled CDS
          Length = 123

 Score = 95.1 bits (235), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 55/59 (93%), Gaps = 1/59 (1%)

Query: 1   LTAAALTASMVMPDVAEAAE-LSPSLKNFLLSIVAGGVVLTAIVGAVIGVANFDPVKRS 58
           LTAAALTASMV+P+ AEAA  +SPSLKNFLLSIVAGGVVL AIVGAVIGVANFDPVKR+
Sbjct: 65  LTAAALTASMVLPEAAEAASGVSPSLKNFLLSIVAGGVVLGAIVGAVIGVANFDPVKRT 123