Jatropha Genome Database

JcCA0066101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066101.10 + phase: 1 /partial
         (67 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037287001 assembled CDS                                       102   4e-23
GSVIVT01009151001 assembled CDS                                        90   3e-19
GSVIVT01003597001 assembled CDS                                        85   6e-18

>GSVIVT01037287001 assembled CDS
          Length = 886

 Score =  102 bits (254), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 51/66 (77%)

Query: 2   KVEGILRQSADXXXXXXXXXXXXXGKSEFEPDEDAHVVGDCVKHVLRELPSSPVPASCCT 61
           KVEGILRQSAD             GK+EF  DEDAHVVGDCVKHVLRELPSSPVPASCCT
Sbjct: 197 KVEGILRQSADVEEVDRRVQEYEQGKTEFGADEDAHVVGDCVKHVLRELPSSPVPASCCT 256

Query: 62  ALLEAY 67
           ALLEAY
Sbjct: 257 ALLEAY 262


>GSVIVT01009151001 assembled CDS
          Length = 900

 Score = 89.7 bits (221), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/65 (64%), Positives = 48/65 (73%)

Query: 2   KVEGILRQSADXXXXXXXXXXXXXGKSEFEPDEDAHVVGDCVKHVLRELPSSPVPASCCT 61
           K+EGILRQ+AD             GK+EF PDED H++ DCVK+VLRELPSSPVPASCC 
Sbjct: 161 KIEGILRQAADVDDVECRIREYEKGKNEFSPDEDPHIIADCVKYVLRELPSSPVPASCCN 220

Query: 62  ALLEA 66
           ALLEA
Sbjct: 221 ALLEA 225


>GSVIVT01003597001 assembled CDS
          Length = 489

 Score = 85.1 bits (209), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 45/66 (68%)

Query: 1   TKVEGILRQSADXXXXXXXXXXXXXGKSEFEPDEDAHVVGDCVKHVLRELPSSPVPASCC 60
            KVEGI RQSA              G +EF PDED HVV DC+KHVLRELPSS VPASCC
Sbjct: 206 VKVEGIFRQSASVDDVARRVREYEQGNNEFSPDEDPHVVADCIKHVLRELPSSLVPASCC 265

Query: 61  TALLEA 66
           +ALL+A
Sbjct: 266 SALLKA 271