Jatropha Genome Database

JcCA0066031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066031.10 + phase: 1 /partial
         (391 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008368001 assembled CDS                                       452   e-127
GSVIVT01033248001 assembled CDS                                       252   3e-67
GSVIVT01037699001 assembled CDS                                       195   4e-50
GSVIVT01010089001 assembled CDS                                       168   3e-42

>GSVIVT01008368001 assembled CDS
          Length = 446

 Score =  452 bits (1164), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/388 (57%), Positives = 285/388 (73%), Gaps = 27/388 (6%)

Query: 6   KIEPAVCHAAERSDFCDIKGDVRIDANTSTVFVVSS-EIDIAAANTSSWKIRPYARKGDI 64
           ++E  VC+   RSDFC I GDVR+  N+STVF+ SS  +DI   N  SW IRPYARKGD 
Sbjct: 83  EMEALVCNIEPRSDFCVISGDVRVHGNSSTVFIASSAPVDILPEN-GSWSIRPYARKGDA 141

Query: 65  VAMKNTREWSLKLVTNHKNSIPKCTQNHNVHGILFSLGGYSGNHFHAFTDIIVPLFSTAR 124
            AMK+ + +++K+ T  ++ +P CTQNH V  ILFSLGGYSGNHFHAF+D+++PL+ T+R
Sbjct: 142 RAMKHIKNFTVKMTTGRQH-LPHCTQNHTVPAILFSLGGYSGNHFHAFSDVLIPLYLTSR 200

Query: 125 PFNGVVQFLVTDIQQRWIAKFRVLLKALSRYDVIDIDNTGHVHCFTSIIVGLKRQSSKEL 184
            FNG VQFLVT     WIAKFR+LL+ LSRY +IDID    +HCF+S I+GLK       
Sbjct: 201 QFNGEVQFLVTSKSLWWIAKFRILLQELSRYPIIDIDREEGIHCFSSAIIGLK------- 253

Query: 185 SIDTSKFGYSTKDFRQFLSSSYSLRKTSAIKMKNNM-KKRPRLLIISRKRSRAFTNVNEI 243
                          +FL SSYSL++ +AIK+++    K+PRLLII+RK+SR+FTN  +I
Sbjct: 254 ---------------EFLRSSYSLKRATAIKVRDGTDTKKPRLLIIARKKSRSFTNDGKI 298

Query: 244 AKMARRLGYKVVVDEPDAN-VSRSAQVMNSCDVVLGVHGAGLTNIVFLPENAVLIQVVPF 302
           A+MAR LGY+V+V EP+   +SR A+++NSCDV++GVHGAGLTNIVFLPENAVLIQVVP 
Sbjct: 299 AEMARSLGYEVIVAEPNGTEISRFAELVNSCDVLMGVHGAGLTNIVFLPENAVLIQVVPL 358

Query: 303 GGAEWVSKTFFQEPAKEMNIRYLEYKISIEESSLIQQYPADHVVLRNPSVIQKQGWEAFK 362
           GG EWV++  F  PA +M IRY+EY+I  EESSLI++YP +H VLR P  I K GW   K
Sbjct: 359 GGLEWVARYDFGLPAVDMKIRYIEYQIKEEESSLIEKYPHEHAVLREPHSITKLGWLELK 418

Query: 363 SIYFDKQNVKLDLNRFRYTLLKALELLH 390
           ++Y DKQNVKLDLNRFR TLL+AL+LLH
Sbjct: 419 AVYLDKQNVKLDLNRFRNTLLQALQLLH 446


>GSVIVT01033248001 assembled CDS
          Length = 486

 Score =  252 bits (643), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 221/382 (57%), Gaps = 13/382 (3%)

Query: 14  AAERSDFCDIKGDVRIDANTSTVFVVSSEIDIAAANTSSWKIRPYARKGDIVAMKNTREW 73
           +A R+D C +KGDVR  +++S++F+   E +         KI+PY RK +   M    E 
Sbjct: 95  SAFRTDTCFMKGDVRTHSSSSSIFLYGKEFE--EEQLQHEKIKPYTRKWEASVMDTIDEL 152

Query: 74  SLKLVTNHKNSIPKCTQNHNVHGILFSLGGYSGNHFHAFTDIIVPLFSTARPFNGVVQFL 133
            L        +   C  +H+V  + FS GGY+GN +H F D I+PL+ T++  N  V F+
Sbjct: 153 HLISKKEGYGTHHHCDVHHDVPAVFFSTGGYTGNIYHEFNDGILPLYITSQHLNKRVVFV 212

Query: 134 VTDIQQRWIAKFRVLLKALSRYDVIDIDNTGHVHCFTSIIVGLKRQSSKELSIDTS--KF 191
           + +    WI K+  ++  LS Y  ID       HCF   IVGL+     EL++D+S  + 
Sbjct: 213 ILEYHDWWITKYGDVISQLSDYPPIDFSGDNRTHCFPEAIVGLRIHD--ELTVDSSLVEG 270

Query: 192 GYSTKDFRQFLSSSYSLRKTSAIKMKNNMK----KRPRLLIISRKRSRAFTNVNEIAKMA 247
             S +DFR  L  +Y  R  S I+ K   +    K+P+L+++SR  +RA TN + + +MA
Sbjct: 271 NESIRDFRNLLDQAYLPRIRSLIQAKEQKQVHQLKKPKLVVLSRTGARAITNEDLMVQMA 330

Query: 248 RRLGYKVVVDEPD--ANVSRSAQVMNSCDVVLGVHGAGLTNIVFLPENAVLIQVVPFGGA 305
           + +G++V V  P+    +++  +V+NS D ++GVHGA +T+I+FL   +V IQV+P  G 
Sbjct: 331 KEIGFQVKVLRPNRATELAKIYRVLNSSDAMVGVHGAAMTHILFLQPGSVFIQVIPL-GT 389

Query: 306 EWVSKTFFQEPAKEMNIRYLEYKISIEESSLIQQYPADHVVLRNPSVIQKQGWEAFKSIY 365
           EW ++T++ EPA+++ ++Y+ YKI   ESSL  +Y  D  VLR+P  + K+GWE  K +Y
Sbjct: 390 EWPAETYYGEPAEKLGLKYMGYKILPRESSLYNEYAKDDPVLRDPDSLAKKGWEFTKRVY 449

Query: 366 FDKQNVKLDLNRFRYTLLKALE 387
            D Q V LDL RFR  L+ A +
Sbjct: 450 LDHQTVTLDLRRFRKQLVCAYD 471


>GSVIVT01037699001 assembled CDS
          Length = 420

 Score =  195 bits (495), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 162/260 (62%), Gaps = 6/260 (2%)

Query: 132 FLVTDIQQRWIAKFRVLLKALSRYDVIDIDNTGHVHCFTSIIVGLKRQSSKELSIDTSKF 191
           F++TD +   + +++ +LK LS Y+ I+    G VHCF   ++GLK   +  L+      
Sbjct: 158 FVITDDKPWMVERYKRILKQLSAYNAINPAEDGSVHCFPGAVIGLKYHDNLALNTSDIPG 217

Query: 192 GYSTKDFRQFLSSSYSLRKTSAIKMKNNMKKRPRLLIISRKRSRAFTNVNEIAKMARRLG 251
           GYS  DF+ FL  SYSL+ T+A ++++    +P L++ISR+ +R F N +E   +   LG
Sbjct: 218 GYSMSDFKHFLRKSYSLKITTASEIEH---PKPVLILISRRTTRKFLNEDETVGLMEDLG 274

Query: 252 YKVVVDEP--DANVSRSAQVMNSCDVVLGVHGAGLTNIVFLPENAVLIQVVPFGGAEWVS 309
           ++V++  P   +++ + AQV+NSC V++G HGAGL N V LP  AV +QVVP G  +  S
Sbjct: 275 FQVIITPPYNMSSLDKFAQVVNSCSVMVGAHGAGLANSVLLPAGAVTVQVVPLG-LDRAS 333

Query: 310 KTFFQEPAKEMNIRYLEYKISIEESSLIQQYPADHVVLRNPSVIQKQGWEAFKSIYFDKQ 369
              + +PA+++ ++YLEYKI  EESSL   Y  D  ++ +P  I  +G++  +++Y D Q
Sbjct: 334 AANYGDPARKIGVQYLEYKIEAEESSLFDLYGRDQPIIADPQSIHLKGYDVARAVYLDGQ 393

Query: 370 NVKLDLNRFRYTLLKALELL 389
           ++K++L R R  L++A +LL
Sbjct: 394 DMKINLVRLREILVQARKLL 413


>GSVIVT01010089001 assembled CDS
          Length = 354

 Score =  168 bits (426), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 184/377 (48%), Gaps = 53/377 (14%)

Query: 16  ERSDFCDIKGDVRIDANTSTVFVVSSEIDIAAANTSSWKIRPYARKGDIVAMKNTREWSL 75
           +R D C +     ++  TST F+V     +        K+RPY RK +   M   +E  +
Sbjct: 12  QRYDMCTVNATTVLEPTTSTFFLVEPTQALME------KVRPYPRKWETSVMGRIKE--V 63

Query: 76  KLVTNHKNSIPKCTQNHNVHGILFSLGGYSGNHFHAFTDIIVPLFSTARPF--NGVVQFL 133
           +L +   +  P C  +H+   ++FS GGY+GN FH F D  +PL+ T      +G    +
Sbjct: 64  RLTSGPPS--PSCQVHHSAPALVFSAGGYTGNVFHDFNDGFIPLYITVNSIFPDGNYVLV 121

Query: 134 VTDIQQRWIAKFRVLLKALSRYDVIDIDNTGHVHCFTSIIVGLKRQSSKELSIDTSKFGY 193
           +   ++ W +K+  LL  LS++ +++++     HCF    VGL   S   ++ID +    
Sbjct: 122 IHSSRRWWESKYADLLHTLSKHPIVNLEKANATHCFPYAHVGLI--SHGFMTIDPTLMPS 179

Query: 194 STK--DFRQFLSSSYSLRKTSAIKMKNNMKKRPRLLIISRKRSRAFTNVNEIAKMARRLG 251
           S     FR FL ++Y+                         ++  F            +G
Sbjct: 180 SINLTHFRGFLDAAYA-------------------------QNHPFPT--------EEVG 206

Query: 252 YKVVVDEPDANVS--RSAQVMNSCDVVLGVHGAGLTNIVFLPENAVLIQVVPFGGAEWVS 309
           + V++  P    S   +  ++NS   ++GVHGA LT+ +FL   +VL+QVVP G A W +
Sbjct: 207 FHVILFHPTPTTSLREAYALINSSHAMMGVHGAALTHSLFLRPGSVLMQVVPLGLA-WAA 265

Query: 310 KTFFQEPAKEMNIRYLEYKISIEESSLIQQYPADHVVLRNPSVIQKQGWEA-FKSIYFDK 368
           +T F   ++E+ + Y+EYKI  +ES+L  +Y  D +++++P   Q +GW      +Y  +
Sbjct: 266 ETCFGNSSRELGLEYMEYKIGEKESTLADKYGNDDIMVKDPVRAQGKGWSTKIMDVYLKE 325

Query: 369 QNVKLDLNRFRYTLLKA 385
           QN+ LDL RFR  L +A
Sbjct: 326 QNITLDLVRFRRHLEEA 342