Jatropha Genome Database

JcCA0065831.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0065831.30 - phase: 1 /partial/short
         (32 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007521001 assembled CDS                                        66   3e-12
GSVIVT01010328001 assembled CDS                                        62   4e-11
GSVIVT01001842001 assembled CDS                                        62   7e-11
GSVIVT01036751001 assembled CDS                                        50   2e-07

>GSVIVT01007521001 assembled CDS
          Length = 343

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/32 (93%), Positives = 32/32 (100%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           PEEIPWG+TGAEFVVESTGVFTDK+KAAAHLK
Sbjct: 90  PEEIPWGETGAEFVVESTGVFTDKDKAAAHLK 121


>GSVIVT01010328001 assembled CDS
          Length = 380

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 31/32 (96%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           PEEIPW +TGA++VVESTGVFTDK+KAAAHLK
Sbjct: 128 PEEIPWAETGADYVVESTGVFTDKDKAAAHLK 159


>GSVIVT01001842001 assembled CDS
          Length = 337

 Score = 61.6 bits (148), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 30/32 (93%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           PEEIPWG+ GAE+VVESTGVFTDK+KAA HLK
Sbjct: 84  PEEIPWGEAGAEYVVESTGVFTDKDKAALHLK 115


>GSVIVT01036751001 assembled CDS
          Length = 429

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/32 (65%), Positives = 26/32 (81%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           P EIPWG  G ++VVES+GVFT  EKA+AH+K
Sbjct: 173 PSEIPWGDYGIDYVVESSGVFTTTEKASAHIK 204