Jatropha Genome Database

JcCA0065711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0065711.10 + phase: 0 
         (277 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009245001 assembled CDS                                       264   3e-71
GSVIVT01035647001 assembled CDS                                       173   7e-44
GSVIVT01025636001 assembled CDS                                       113   1e-25
GSVIVT01022064001 assembled CDS                                        72   4e-13

>GSVIVT01009245001 assembled CDS
          Length = 381

 Score =  264 bits (675), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 145/278 (52%), Positives = 168/278 (60%), Gaps = 39/278 (14%)

Query: 1   MASIRRTLSPAYHDRTYQXXXXXXXXXXXXXXXXHKFFTNSGTKYSTPFASSLFSFNVFP 60
           MASIRRT SPAYHDR YQ                 K  +N       PF    FS     
Sbjct: 1   MASIRRTQSPAYHDRPYQNGGTSFSVSSPS----QKLLSNGKCSSPLPF----FSSYGVG 52

Query: 61  LRWFLTAAFFQK--RKGFRRSLYRCXXXXXXXXXXXXXXXXXXENDVQNHDFSFEIKPPH 118
           +R F+  AF QK  RK +RRS YRC                  E D+++ DFSFEIKP  
Sbjct: 53  IRRFVAGAFLQKYSRKVWRRSAYRCLVFFLLGFLLGMSPFGEVE-DIKSQDFSFEIKPSP 111

Query: 119 VNVQLDDGGGDNRGIKRDVFALNSVSLGVDTQVNYISRFDYVPRKQLIVITPTYNRALQA 178
           VN                             Q     RF+++P+KQ+IV+TPTYNRALQA
Sbjct: 112 VN----------------------------RQSKTKERFNFIPKKQIIVVTPTYNRALQA 143

Query: 179 FFLNRLGQVLRLVQPPLLWIVVEMKTASVETAEILRKTGAMYRHLVCERNSTNVKDRGVH 238
           F+LNRLGQVLRLV PP+LW+VVEM  AS+ETAEILRKTG MYRH+VC +NSTNVKDRGVH
Sbjct: 144 FYLNRLGQVLRLVPPPILWMVVEMNVASMETAEILRKTGVMYRHIVCTKNSTNVKDRGVH 203

Query: 239 QRNVALEHIERHRLDGIAYFADDDNVYSLELFESLRDI 276
           QRN ALEHIE H+LDGI YFADDDN+YSLELF+ LR+I
Sbjct: 204 QRNAALEHIEHHKLDGIVYFADDDNIYSLELFKGLREI 241


>GSVIVT01035647001 assembled CDS
          Length = 448

 Score =  173 bits (439), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 161/312 (51%), Gaps = 38/312 (12%)

Query: 1   MASIRRTLSPAYHDRTY-QXXXXXXXXXXXXXXXXHKFFTNSGTKYSTPFASSLFSFNVF 59
           MASIRRTLSPA  DRT                    + ++  G   S  F+SS      +
Sbjct: 1   MASIRRTLSPAPRDRTLLNGEACSVPSPLSKSSSSTQNYSPEGRLLSPSFSSSDSRLAWY 60

Query: 60  PLRWFLTAAFFQ---------KRKG--FRRSLYR---CXXXXXXXXXXXXXXXXXXENDV 105
            ++ F+     Q         K +G  +RR+L+    C                   N +
Sbjct: 61  RIQAFIIGILSQRSSRPLERSKSRGHVWRRALFHFSICFMVGVFTGFTPFVSMNLSMNLM 120

Query: 106 QNHD-FSFEIKPPHVNVQ-------------LDDGGGDN------RGIKRDVFALNSVSL 145
             H  F F + PP   +Q             L+ G  DN      + +K+++  +N  + 
Sbjct: 121 SKHQAFYFGLIPPVGKLQAYGFVSSKREMPSLNSGITDNNVTLGPQAMKQEL--VNGTAG 178

Query: 146 GVDTQVNYISRFDYVPRKQLIVITPTYNRALQAFFLNRLGQVLRLVQPPLLWIVVEMKTA 205
            V+T    I   + V RK LI++TPTY R  QA++LNRL   L+ V PPLLWIVVEM + 
Sbjct: 179 DVNTPT-LIQNSNLVSRKLLIIVTPTYARPFQAYYLNRLAHTLKQVPPPLLWIVVEMMSQ 237

Query: 206 SVETAEILRKTGAMYRHLVCERNSTNVKDRGVHQRNVALEHIERHRLDGIAYFADDDNVY 265
           S ETA++L +TG MYRHL+C +N T++KDRGVH RN AL HIE HRLDG  YFADDDN+Y
Sbjct: 238 SAETADMLMRTGVMYRHLMCNKNLTDIKDRGVHLRNTALSHIETHRLDGTVYFADDDNIY 297

Query: 266 SLELFESLRDIR 277
           S++LFE +R IR
Sbjct: 298 SVDLFEQIRQIR 309


>GSVIVT01025636001 assembled CDS
          Length = 292

 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 64/94 (68%)

Query: 183 RLGQVLRLVQPPLLWIVVEMKTASVETAEILRKTGAMYRHLVCERNSTNVKDRGVHQRNV 242
           RL   LRLV PPLLWIVVE +T S E +EILRKTG MYRHLV + N T       HQRN+
Sbjct: 67  RLAYTLRLVPPPLLWIVVEAQTDSSEVSEILRKTGIMYRHLVSKENFTEPAAEMDHQRNL 126

Query: 243 ALEHIERHRLDGIAYFADDDNVYSLELFESLRDI 276
           AL HIE H+L GI +FA   NVY L  F+ +RDI
Sbjct: 127 ALSHIEHHKLSGIVHFAALSNVYDLRFFDEIRDI 160


>GSVIVT01022064001 assembled CDS
          Length = 475

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 4/119 (3%)

Query: 163 KQLIVITPTYNRALQAFFLNRLGQVLRLVQPPLLWIVVEMKTASVETAEILRKTGAMYRH 222
           + +IV+TPTY R  Q   L  L   L  V   L+WIV+E    + ETA +L K+G    H
Sbjct: 127 RTVIVVTPTYVRTFQTLHLTGLMHSLMNVPYDLIWIVIEAGGTTNETASLLAKSGLRTIH 186

Query: 223 LVCERNSTNV-KDR---GVHQRNVALEHIERHRLDGIAYFADDDNVYSLELFESLRDIR 277
           +  +R   N  +DR       R  AL  +   +LDGI  F DD N++S+ELF+ ++ ++
Sbjct: 187 IGFDRRMPNSWEDRHRLEAQMRLRALRIVREEKLDGILMFGDDSNMHSMELFDEIQKVK 245