Jatropha Genome Database

JcCA0064141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0064141.10 - phase: 0 /pseudo/partial
         (261 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023338001 assembled CDS                                       363   e-101

>GSVIVT01023338001 assembled CDS
          Length = 497

 Score =  363 bits (932), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/257 (72%), Positives = 208/257 (80%), Gaps = 21/257 (8%)

Query: 18  KIPHVLTVAGSDSGAGAGIQADLKTCAARGVFCSTVITAVTAQNTVGVQGVNIVPEDFVA 77
           KIPHVLTVAGSDSGAGAGIQADLK CAARGV+CSTVITAVTAQNTVGVQGVNIVPEDFVA
Sbjct: 2   KIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTVGVQGVNIVPEDFVA 61

Query: 78  EQLKSVLSDMQVDVVKTGMLPSIGIVNILRQSLREFPVRG-------------SFGG*SC 124
           EQLKSVLSDM VDVVKTGMLP+IGIV +L  SL+EFPV+                 G S 
Sbjct: 62  EQLKSVLSDMHVDVVKTGMLPTIGIVKVLHHSLKEFPVQALVVDPVMVSTSGDVLAGPSI 121

Query: 125 HGIYKWRCASWSFHSFLFSADIITPNIKEASALLGGTPLKTVADMRSAAKLLHAIGPRNV 184
              ++           L  ADI+TPN+KEASALLGG  L+TV+DM +AAKL+H +GPRNV
Sbjct: 122 LAAFR--------EELLPMADIVTPNLKEASALLGGLQLETVSDMCTAAKLIHDMGPRNV 173

Query: 185 LVKGGDLPDSLDAVDIFFDGKNYHELRASRIKTRNTHGTGCTLASCIAAELAKGSPMLSA 244
           LVKGGDLP SLDAVDIFFDG +++ELR+SRIKTRNTHGTGCTLASCIAAELAKGS +LSA
Sbjct: 174 LVKGGDLPSSLDAVDIFFDGDDFYELRSSRIKTRNTHGTGCTLASCIAAELAKGSQILSA 233

Query: 245 VKIAKRYVETALEYSKD 261
           VK AK Y+ETAL+YSKD
Sbjct: 234 VKAAKHYIETALDYSKD 250