Jatropha Genome Database

JcCA0061381.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0061381.20 + phase: 2 /TE
         (456 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028612001 assembled CDS                                       163   1e-40
GSVIVT01014104001 assembled CDS                                       140   2e-33
GSVIVT01034745001 assembled CDS                                        93   2e-19
GSVIVT01017026001 assembled CDS                                        82   4e-16
GSVIVT01024357001 assembled CDS                                        81   1e-15

>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/297 (36%), Positives = 145/297 (48%), Gaps = 46/297 (15%)

Query: 66  CPDCMAGKQNRVALKIIPPSRMKNVLDLIHLDLCGPLT-MSYVGNRYFVIFIDDHSRKTX 124
           C DC+ GKQ+R ++      R   +L L+H D+CGP+  +S    RY + F DD SRKT 
Sbjct: 488 CKDCLVGKQHRSSIPKKSNWRAAEILQLVHADICGPINPISNSKKRYLLTFTDDFSRKTW 547

Query: 125 VXPL-------------------------KCIRTDNGGEYTGPIDAFYKE-HGIRHQTTH 158
           V  L                         +C+RTD GGE+T    A + + HGIR Q T 
Sbjct: 548 VYFLVEKSEAFAVFKSFKTYVEKETSSFLRCLRTDRGGEFTSQEFAIFCDVHGIRRQLTA 607

Query: 159 PKTLQLNSLAERMNRTLMERVRCLLSHAKLSKGFR------XXXXXXXXPCVPLQYDIPE 212
             T Q N +AER NRT+M  VR +LS  KL K F               P   +Q   PE
Sbjct: 608 AYTPQQNGVAERKNRTIMNMVRSMLSAKKLPKTFWPEAVNWTVHVLNRSPTFAVQNKTPE 667

Query: 213 RVWSGKDVSYDHLRVFGCKVFVHVPKDERSKLDVKTRQCVFIGYGQDQFGYKFYDPIQKT 272
             W     S D+ RVFGC   VHVP  +R+KLD K+  CV +G  ++   Y+ YDPI + 
Sbjct: 668 EAWGKLKPSVDYFRVFGCLSHVHVPDSKRTKLDDKSFSCVLLGVSEESKAYRLYDPISQK 727

Query: 273 IIRSSDVVFVEDQTIKDIEKTQKLSTNRFDEDSTDIQIVPPIEHRQIGDEENVPQEQ 329
           II S DVVF ED+   D +K       +++E      IV  +E    G+E  V +E+
Sbjct: 728 IIISRDVVFEEDKNW-DWDK-------KYEE-----AIVCDLEWGDDGEEATVNEEE 771


>GSVIVT01014104001 assembled CDS
          Length = 1354

 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 168/380 (44%), Gaps = 79/380 (20%)

Query: 49   LVRKNILPELDKVHLDKCPDCMAGKQNRVALKIIPPSRMKNVLDLIHLDLCGPLTMS-YV 107
            LV++ IL  LD      C +C+ GKQ +   K    +R   +L++IH D+CGPL++  + 
Sbjct: 822  LVKEGILQNLDFTDFHVCVNCIKGKQTKHTKK--GATRSNELLEIIHTDICGPLSIPCFT 879

Query: 108  GNRYFVIFIDDHSRKTXVX-------------------------PLKCIRTDNGGEYTG- 141
            G +YF+ FIDD SR   V                           +K +R+D GGEY G 
Sbjct: 880  GEKYFITFIDDLSRYGYVYLMHEKSQAIDIFEMFITEVERQLDKKIKIVRSDQGGEYYGR 939

Query: 142  ---------PIDAFYKEHGIRHQTTHPKTLQLNSLAERMNRTLMERVRCLLSHAKLS--- 189
                     P   F ++HGIR Q T P T Q N +AER NRTLME VR ++S++ +    
Sbjct: 940  YDESGQNPGPFAKFLEKHGIRAQYTMPGTPQQNGVAERRNRTLMEMVRSMMSYSSVPISL 999

Query: 190  KGFRXXXXXXXXPCVPLQY--DIPERVWSGKDVSYDHLRVFGCKVFVHVPKDERSKLDVK 247
             G            VP +     P  +W+G+  S  H+ ++GC     +      KLD +
Sbjct: 1000 WGEALKTAMYILNRVPSKAVPKTPFELWTGRKPSLRHIHIWGCPAEARIYNPHEKKLDSR 1059

Query: 248  TRQCVFIGYGQDQFGYKFYDPIQKT-IIRSSDVVFVEDQTIKDIEKTQKLSTNRFDEDST 306
            T    FIGY     GY+FY P     I+ + +  F+E+  I    + +K+     +E   
Sbjct: 1060 TVSGYFIGYPDKSKGYRFYCPNHSVRIVETGNARFLENGEISGSNEPRKVD---IEEIRV 1116

Query: 307  DI-------QIVPPIEHRQIGDEE------NVPQEQVSXXXXXXXXXXXXXXXXYGVHVQ 353
            DI       +I+ P   +Q+ D E      ++P E ++                    V+
Sbjct: 1117 DIPPPFLPQEIIVPQPVQQVEDNEQNNRDGSLPLENIAIENA----------------VE 1160

Query: 354  PPAPEGSQTLRRSSRVRQPS 373
            PP P     LRRS R R+P+
Sbjct: 1161 PPQP---APLRRSQRERRPA 1177


>GSVIVT01034745001 assembled CDS
          Length = 2196

 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 89/197 (45%), Gaps = 33/197 (16%)

Query: 21  DEGFCSTFRNGQWKLTKCSFVVAKGMTTLVRKNILPELDKVHLDKCPDCMAGKQNRVALK 80
           DE      R G + L    F+   GM        +PE+  V+   C  C  GKQ R    
Sbjct: 460 DESVVWHKRYGHFNLKSLRFMQEAGMV-----EDMPEIS-VNAQTCESCELGKQQRQPFP 513

Query: 81  IIPPSRMKNVLDLIHLDLCGPL-TMSYVGNRYFVIFIDDHSRKTXVXPL----------- 128
                +  + L+LI+ D+CGP+ T S   N YF +FIDD SR T V  L           
Sbjct: 514 QNMSKKATHKLELINSDICGPMSTASLSNNVYFALFIDDLSRMTWVYFLKTKSQVLSVFK 573

Query: 129 --------------KCIRTDNGGEYTG-PIDAFYKEHGIRHQTTHPKTLQLNSLAERMNR 173
                         K +RTDNGGEY    ++ F +E GI HQ   P + Q N + ER NR
Sbjct: 574 SFKKMVETQSGQNVKVLRTDNGGEYISKELNVFCQEAGIVHQLIAPYSPQQNGVFERKNR 633

Query: 174 TLMERVRCLLSHAKLSK 190
           T+ME  RC+L   KL K
Sbjct: 634 TVMEMARCMLFEKKLPK 650


>GSVIVT01017026001 assembled CDS
          Length = 1273

 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 113/277 (40%), Gaps = 49/277 (17%)

Query: 29   RNGQWKLTKCSFVVAKGMTTLVRKNILPELDKVHLDKCPDCMAGKQNRVALKIIPPSRMK 88
            R G       SF+  KG  +L+     P L       C  C   K +R     +P SR +
Sbjct: 1009 RLGHVNYFVISFLHKKGHLSLMSLLPSPSL-------CSTCQLAKNHR-----LPYSRNE 1056

Query: 89   N----VLDLIHLDLCGPLTM-SYVGNRYFVIFIDDHSRKTXVXPLK-------------- 129
            +    VLDLIH DL GP  + S  G  Y+VIFIDD+SR T + PLK              
Sbjct: 1057 HRSSHVLDLIHCDLPGPSPIKSNSGFLYYVIFIDDYSRFTWLYPLKFKSDFFDIFLQFKK 1116

Query: 130  -----------CIRTDNGGEYTGP-IDAFYKEHGIRHQTTHPKTLQLNSLAERMNRTLME 177
                         ++D G E+T     A  +  GI HQ + P T   N  AER +R + E
Sbjct: 1117 FVENQHFARIKVFQSDGGAEFTNTCFKAHLRTSGIHHQLSCPYTPAQNGRAERKHRHVTE 1176

Query: 178  RVRCLLSHAKLSKGFRXXXXXXXX------PCVPLQYDIPERVWSGKDVSYDHLRVFGCK 231
                LL H+ LS  F               P   L    P  +  G    Y++   FGC+
Sbjct: 1177 TGLTLLFHSHLSPRFWVDAFSTATYIINRLPTPLLGGKSPFELLYGYSPHYENFHPFGCR 1236

Query: 232  VFVHVPKDERSKLDVKTRQCVFIGYGQDQFGYKFYDP 268
            V+  +     +KL  ++  C+F+GY     G+ +  P
Sbjct: 1237 VYPCLRDYMPNKLSPRSIPCIFLGYSPSHKGFHYNLP 1273


>GSVIVT01024357001 assembled CDS
          Length = 851

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 12/175 (6%)

Query: 161 TLQLNSLAERMNRTLMERVRCLLSHAKLSKGFRXXXXXXXX------PCVPLQYDIPERV 214
           T Q N + ER N+T+ME  + +L    L K F               P   L        
Sbjct: 515 TPQQNGVVERKNQTVMEMAKAMLYEKGLPKFFWVEAVNTVVYLLNRCPTKALLNKTLIEA 574

Query: 215 WSGKDVSYDHLRVFGCKVFVHVPKDERSKLDVKTRQCVFIGYGQDQFGYKFYDPIQKTII 274
           WSG++ S  H +VFGC  +  VPK+ RSKLD  + +C+F+GY     GY+ Y+     +I
Sbjct: 575 WSGRNPSVRHFKVFGCLCYSQVPKERRSKLDETSEKCIFMGYSSQSKGYRLYNLKTNKLI 634

Query: 275 RSSDVVFVEDQTIKDIEKTQKL-STNRFDEDSTDIQIVPPIEHRQIGDEENVPQE 328
            S  V+F E +   + EK + L  T   DE    +QI  P+E        + PQ+
Sbjct: 635 ISRYVIFYE-KAAWNWEKGKILKKTILVDE----LQIKTPVETGNGSTSTSSPQD 684