Jatropha Genome Database

JcCA0060881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0060881.10 + phase: 0 /partial
         (93 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009009001 assembled CDS                                       165   4e-42
GSVIVT01003078001 assembled CDS                                       154   1e-38
GSVIVT01000816001 assembled CDS                                        73   3e-14
GSVIVT01001983001 assembled CDS                                        51   1e-07

>GSVIVT01009009001 assembled CDS
          Length = 386

 Score =  165 bits (418), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 84/86 (97%)

Query: 8   LALSNLRLYLHAVTETKLVVDTSRGETLRINFDVTFPALPCSILSLDAMDISGEQHLDVK 67
           L +S LRLYLHAVTETKLVVDTSRGETLRINFDVTFPALPCSILSLDAMDISGEQHLDV+
Sbjct: 42  LFISELRLYLHAVTETKLVVDTSRGETLRINFDVTFPALPCSILSLDAMDISGEQHLDVR 101

Query: 68  HDIIKKRLDSHGNVIEARQDGIGAPK 93
           HDIIKKR+D+HG+VIEARQDGIG+PK
Sbjct: 102 HDIIKKRIDAHGSVIEARQDGIGSPK 127


>GSVIVT01003078001 assembled CDS
          Length = 386

 Score =  154 bits (388), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/86 (79%), Positives = 77/86 (89%)

Query: 8   LALSNLRLYLHAVTETKLVVDTSRGETLRINFDVTFPALPCSILSLDAMDISGEQHLDVK 67
           L  S LRLYLH VTETKLVVDTSRG TLRINFDVTFPA+PCS+L+LDAMDISGEQH D+K
Sbjct: 42  LFFSELRLYLHTVTETKLVVDTSRGGTLRINFDVTFPAVPCSVLTLDAMDISGEQHHDIK 101

Query: 68  HDIIKKRLDSHGNVIEARQDGIGAPK 93
           HDI+KKR+D+HGNV+  RQDGIG P+
Sbjct: 102 HDIVKKRIDAHGNVVAVRQDGIGGPQ 127


>GSVIVT01000816001 assembled CDS
          Length = 351

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 52/79 (65%)

Query: 4   ITQNLALSNLRLYLHAVTETKLVVDTSRGETLRINFDVTFPALPCSILSLDAMDISGEQH 63
           I   L L  LR YL   T  ++ VD  RGETL I+ ++TFP+LPC +LS+DA+D+SG+  
Sbjct: 37  IMATLFLHELRYYLTTYTVHQMSVDLKRGETLPIHINMTFPSLPCDVLSVDAIDMSGKHE 96

Query: 64  LDVKHDIIKKRLDSHGNVI 82
           +D+  +I K RL+  G +I
Sbjct: 97  VDLDTNIWKLRLNRDGFII 115


>GSVIVT01001983001 assembled CDS
          Length = 482

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 8   LALSNLRLYLHAVTETKLVVD-TSRGETLRINFDVTFPALPCSILSLDAMDISGEQHLDV 66
           + LSN   YL   T T ++VD +S G+ LRI F+++FPAL C   S+D  D+ G   L++
Sbjct: 44  MELSN---YLSVSTSTSVIVDQSSDGDFLRIEFNISFPALSCEFASVDVSDVLGTNRLNI 100

Query: 67  KHDIIKKRLD 76
              I K  +D
Sbjct: 101 TKTIRKYSID 110