Jatropha Genome Database

JcCA0060621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0060621.10 + phase: 2 /partial
         (161 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029978001 assembled CDS                                       264   1e-71
GSVIVT01027922001 assembled CDS                                       258   6e-70

>GSVIVT01029978001 assembled CDS
          Length = 528

 Score =  264 bits (675), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 124/130 (95%), Positives = 128/130 (98%)

Query: 1   FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFL 60
           FLSEYRFD+SKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDF+AAAKVF 
Sbjct: 332 FLSEYRFDVSKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFH 391

Query: 61  ASGKKVKVPTFLVPATQKVWMDVYSLPVPGSGGRTCSQIFEEAGCDTPASPSCGACLGGP 120
           ASGKKVKVPTFLVPATQKVWMDVYSLPVPG GG+TCSQIFEEAGCDTPASPSCGACLGGP
Sbjct: 392 ASGKKVKVPTFLVPATQKVWMDVYSLPVPGCGGKTCSQIFEEAGCDTPASPSCGACLGGP 451

Query: 121 KDTYARMNEP 130
           +DTYARMNEP
Sbjct: 452 RDTYARMNEP 461


>GSVIVT01027922001 assembled CDS
          Length = 508

 Score =  258 bits (660), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 122/132 (92%), Positives = 127/132 (96%)

Query: 1   FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFL 60
           FLSEYRFDISKLEPLVAKPHSPD  ALARECKDVKIDRVYIGSCTGGKTEDF+AAAKVF 
Sbjct: 332 FLSEYRFDISKLEPLVAKPHSPDKCALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFH 391

Query: 61  ASGKKVKVPTFLVPATQKVWMDVYSLPVPGSGGRTCSQIFEEAGCDTPASPSCGACLGGP 120
           ASGKKVKVPTFLVPATQKVWMDVYSLPVPG GG+TCSQIFEEAGCDTPASP+CGAC+GGP
Sbjct: 392 ASGKKVKVPTFLVPATQKVWMDVYSLPVPGCGGKTCSQIFEEAGCDTPASPTCGACMGGP 451

Query: 121 KDTYARMNEPMV 132
           +DTYARMNEP V
Sbjct: 452 RDTYARMNEPQV 463