Jatropha Genome Database

JcCA0059791.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0059791.20 + phase: 0 
         (99 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034090001 assembled CDS                                       127   1e-30

>GSVIVT01034090001 assembled CDS
          Length = 209

 Score =  127 bits (318), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 66/96 (68%)

Query: 1  MDWGTVTAEDLMGALREVDWSTPPRPLHEFFSRFTIPRSYPKWNSRFKCNLYYYRTNYFI 60
          MDWG VTAEDL+ ALREVDWSTPPRPL EFFSRFT+PRSY KW+SR KCN YYYRTNYFI
Sbjct: 1  MDWGNVTAEDLIDALREVDWSTPPRPLSEFFSRFTLPRSYSKWSSRLKCNFYYYRTNYFI 60

Query: 61 VIVLALGVACXXXXXXXXXXXXXXXXXXFLNDRYAN 96
          +IV  LG+                    FLND +A 
Sbjct: 61 MIVFILGMGFLRRPIAIVAAFLTALSIAFLNDSFAG 96