Jatropha Genome Database

JcCA0059711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0059711.10 - phase: 0 
         (66 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022145001 assembled CDS                                        52   5e-08

>GSVIVT01022145001 assembled CDS
          Length = 212

 Score = 52.0 bits (123), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 27/49 (55%)

Query: 18  EKMPTQXXXXXXXXXXXXXXXXXXXXXYNYDVAKDVPLEGRYQWVRLKP 66
           EKMP++                     YNYD+ KDVP+EGRY+WVRLKP
Sbjct: 164 EKMPSESELEEFFAAAEKDVQKRFSEKYNYDIVKDVPMEGRYEWVRLKP 212