Jatropha Genome Database

JcCA0055861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0055861.10 + phase: 1 /pseudo/partial
         (261 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029761001 assembled CDS                                       325   2e-89
GSVIVT01036983001 assembled CDS                                       317   3e-87
GSVIVT01008968001 assembled CDS                                       306   9e-84
GSVIVT01036981001 assembled CDS                                       301   2e-82
GSVIVT01008982001 assembled CDS                                        67   7e-12
GSVIVT01035717001 assembled CDS                                        67   7e-12
GSVIVT01022163001 assembled CDS                                        67   1e-11
GSVIVT01008900001 assembled CDS                                        55   3e-08

>GSVIVT01029761001 assembled CDS
          Length = 440

 Score =  325 bits (832), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 156/213 (73%), Positives = 179/213 (84%), Gaps = 4/213 (1%)

Query: 44  TDLIFFCSPNNPTGHAATRQQLEDLVKFAKENGSIIIFDSAYALYGSNDSSXSIFEIPGA 103
           TD+IF CSPNNPTGHAA+R+QLE LV+FA+ N SIIIFDSAYA Y +++S  SIFEIPGA
Sbjct: 213 TDVIFICSPNNPTGHAASRKQLEQLVEFARANRSIIIFDSAYAAYVTDESPRSIFEIPGA 272

Query: 104 KEVAIEISSFSKFAGFTGVRLGWTNIPXELYFS----VINDFNRVVCTCFNGASNIAQAG 159
           +EVAIEISSFSKFAGFTGVRLGWT +P EL FS    VI D+NR+VCTCFNGAS+IAQAG
Sbjct: 273 REVAIEISSFSKFAGFTGVRLGWTVVPDELLFSNGFPVIKDYNRIVCTCFNGASSIAQAG 332

Query: 160 GLACLSSEGFMAVHSMVKYYMENAKLLLDTLAFIGPKAYGGENAPYVWVHFPGSKSWDLF 219
           GLACLSS+G MAV S+V YY ENAK+L DT   +G   YGG NAPY WVHFPG KSWD+F
Sbjct: 333 GLACLSSDGLMAVQSVVDYYKENAKILGDTFTSLGLDVYGGINAPYAWVHFPGMKSWDVF 392

Query: 220 DEILDKTNIITVPGSGFGPRGEEFLRISAFGHR 252
            E+L+KT+IITVPG GFGP GEE +R+SAFGHR
Sbjct: 393 TELLEKTHIITVPGCGFGPGGEEHIRVSAFGHR 425


>GSVIVT01036983001 assembled CDS
          Length = 397

 Score =  317 bits (813), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 147/219 (67%), Positives = 181/219 (82%), Gaps = 4/219 (1%)

Query: 38  LNYPKRTDLIFFCSPNNPTGHAATRQQLEDLVKFAKENGSIIIFDSAYALYGSNDSSXSI 97
           L+   RTD+IFFCSPNNPTG+AATR+QL  LV+FAK+NGSI+++DSAYA+Y S+DS  SI
Sbjct: 164 LSTVSRTDIIFFCSPNNPTGNAATREQLTRLVQFAKDNGSILVYDSAYAMYISDDSPRSI 223

Query: 98  FEIPGAKEVAIEISSFSKFAGFTGVRLGWTNIPXELYFS----VINDFNRVVCTCFNGAS 153
           FEIPGAKEVAIE+SSFSK+AGFTGVRLGWT +P EL +S    V  DFNR+VCT FNGAS
Sbjct: 224 FEIPGAKEVAIEVSSFSKYAGFTGVRLGWTVVPKELLYSDGFPVAKDFNRIVCTTFNGAS 283

Query: 154 NIAQAGGLACLSSEGFMAVHSMVKYYMENAKLLLDTLAFIGPKAYGGENAPYVWVHFPGS 213
           NI+QAGGLACLS EG  A+H +V +Y EN  ++++T   +G   YGG+NAPYVWVHFPG 
Sbjct: 284 NISQAGGLACLSPEGLEAMHKVVGFYQENTNIIMETFTSLGFSVYGGKNAPYVWVHFPGQ 343

Query: 214 KSWDLFDEILDKTNIITVPGSGFGPRGEEFLRISAFGHR 252
            SWD+F EIL+KT+++T PGSGFGP G+ F+R+SAFGHR
Sbjct: 344 SSWDVFSEILEKTHVVTTPGSGFGPAGDGFIRVSAFGHR 382


>GSVIVT01008968001 assembled CDS
          Length = 463

 Score =  306 bits (783), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 151/219 (68%), Positives = 188/219 (85%), Gaps = 4/219 (1%)

Query: 38  LNYPKRTDLIFFCSPNNPTGHAATRQQLEDLVKFAKENGSIIIFDSAYALYGSNDSSXSI 97
           L+   RTD+IF CSPNNPTGHAA+RQQLE LV+FAK NGSIII DSAYA Y +++S  SI
Sbjct: 230 LSNTPRTDIIFLCSPNNPTGHAASRQQLEQLVEFAKANGSIIIHDSAYAAYITDESPRSI 289

Query: 98  FEIPGAKEVAIEISSFSKFAGFTGVRLGWTNIPXELYFS----VINDFNRVVCTCFNGAS 153
           FEIPG +EVAIEISSFSKFAGFTGVRLGWT +P EL +S    VI D+NR+VCTCFNGAS
Sbjct: 290 FEIPGGREVAIEISSFSKFAGFTGVRLGWTVVPEELLYSNGFPVIKDYNRIVCTCFNGAS 349

Query: 154 NIAQAGGLACLSSEGFMAVHSMVKYYMENAKLLLDTLAFIGPKAYGGENAPYVWVHFPGS 213
           +IAQAGGLACLSS+G++A+++++ YY ENAK+++DT   +G K +GG+NAPY+WVHFPG 
Sbjct: 350 SIAQAGGLACLSSDGYLAMNAVLDYYKENAKIIMDTFTSLGLKVHGGKNAPYMWVHFPGL 409

Query: 214 KSWDLFDEILDKTNIITVPGSGFGPRGEEFLRISAFGHR 252
           +SWD+F+EIL+KT+IITVPG+GFGP GE ++R+SAFG R
Sbjct: 410 RSWDVFNEILEKTHIITVPGTGFGPGGEGYIRVSAFGQR 448


>GSVIVT01036981001 assembled CDS
          Length = 469

 Score =  301 bits (771), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 140/219 (63%), Positives = 174/219 (79%), Gaps = 4/219 (1%)

Query: 38  LNYPKRTDLIFFCSPNNPTGHAATRQQLEDLVKFAKENGSIIIFDSAYALYGSNDSSXSI 97
           L+   RTD+IFFCSP NPTG+AATR+QL  LV+FAK+NGSI+++DS YA+Y S+DS  SI
Sbjct: 236 LSTVSRTDIIFFCSPYNPTGNAATREQLTRLVQFAKDNGSILVYDSGYAMYISDDSPRSI 295

Query: 98  FEIPGAKEVAIEISSFSKFAGFTGVRLGWTNIPXELYFS----VINDFNRVVCTCFNGAS 153
           FEIPGAKEVAIE+SSFSK+AGFTGVRLGWT +P EL +S    V  DFNR+ CT FN AS
Sbjct: 296 FEIPGAKEVAIEVSSFSKYAGFTGVRLGWTVVPKELLYSDGFPVAKDFNRIECTTFNAAS 355

Query: 154 NIAQAGGLACLSSEGFMAVHSMVKYYMENAKLLLDTLAFIGPKAYGGENAPYVWVHFPGS 213
           NI+QA GLACLS EG  A+H +V +Y EN  ++++T   +G   YGG+NAPYVWVHFPG 
Sbjct: 356 NISQASGLACLSPEGLEAMHKLVGFYKENTNIIMETFTSLGFSVYGGKNAPYVWVHFPGQ 415

Query: 214 KSWDLFDEILDKTNIITVPGSGFGPRGEEFLRISAFGHR 252
            SWD+F EIL+KT+++T PGSGFGP G+ F+R+ AF HR
Sbjct: 416 SSWDVFSEILEKTHVVTTPGSGFGPAGDGFIRVCAFSHR 454


>GSVIVT01008982001 assembled CDS
          Length = 478

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 25/224 (11%)

Query: 42  KRTDLIFFCSPNNPTGHAATRQQLEDLVKF-AKENGSIIIFDSAYA--LYGSNDSSXSIF 98
           +++ ++  CSP+NPTG    ++ LE++    AK    ++I D  Y   +Y     + S  
Sbjct: 234 EKSRVLILCSPSNPTGSVYPKKLLEEIADIVAKHPRLLVIADEIYEHIIYAPAIHT-SFA 292

Query: 99  EIPGAKEVAIEISSFSKFAGFTGVRLGWTNIPXELYFSVINDFNRVVCTCFNGASNIAQA 158
            +PG  E  + ++ FSK    TG RLG+   P   +F  +    ++     +GAS+I+Q 
Sbjct: 293 SLPGMWERTLTVNGFSKTFAMTGWRLGYLAGP--KHF--VAACGKIQSQVTSGASSISQK 348

Query: 159 GGLACLSS--EGFMAVHSMVKYYMENAKLLLDTLAFI-GPKAYGGENAPYVWVHFPG--- 212
            G+A L     G  AV  MVK + E    L+++   + G K    + A Y+++ F     
Sbjct: 349 AGVAALGLGYRGGEAVAKMVKAFEERRDFLVESFRELGGVKISEPQGAFYLFLDFSSYYG 408

Query: 213 ---------SKSWDLFDEILDKTNIITVPGSGFGPRGEEFLRIS 247
                      S  L   +LDK  +  VPG  FG   ++ +RIS
Sbjct: 409 AEAEGYGIIKDSESLCKYLLDKAQVALVPGDAFG--DDKCIRIS 450


>GSVIVT01035717001 assembled CDS
          Length = 394

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 11/199 (5%)

Query: 46  LIFFCSPNNPTGHAATRQQLEDLVKFAKENGSIIIFDSAYALYGSNDSSXSIFEIPGAKE 105
           L+   +P NPTG       L+ + +  +  G+ ++ D+AY  +  +    S  E      
Sbjct: 168 LVSITNPGNPTGTCIPDPLLKRISEICRRAGTWLVVDNAYEYFTYDGLKHSCVE----GN 223

Query: 106 VAIEISSFSKFAGFTGVRLGWTNIPXELYFSVINDFNRVVCTCFNGASNIAQAGGLACLS 165
             + + SFSK  G  G R+G+   P E+  S+     +V       AS I+Q+  L CL 
Sbjct: 224 HVVNLFSFSKAYGMMGWRVGYIAYPSEVQ-SLRTQLLKVQDNVAICASMISQSTALGCLE 282

Query: 166 SEGFMAVHSMVKYYMENAKLLLDTLAFIGPKAY-GGENAPYVWVHFPGSKSWDLFDEIL- 223
           + G   V + VK  + N +LLL+ L+ IG  A  GG  A Y+W   P  K  D F  +  
Sbjct: 283 A-GREWVRNQVKSLVRNRELLLEALSPIGQDAVKGGGGAIYIWAKLP-EKYQDDFAVVCW 340

Query: 224 --DKTNIITVPGSGFGPRG 240
              +  ++ +PGS  G  G
Sbjct: 341 LAKRHGVVLLPGSACGLAG 359


>GSVIVT01022163001 assembled CDS
          Length = 476

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 25/224 (11%)

Query: 42  KRTDLIFFCSPNNPTGHAATRQQLEDLVKFAKENGSIIIF-DSAYA--LYGSNDSSXSIF 98
           +++ L+  CSP+NPTG   +R+ LE++ +    +  +++  D  Y   +Y     + S  
Sbjct: 232 EKSRLLILCSPSNPTGSVYSRKLLEEIAQIVARHPRLLVLSDEIYEHIIYAPATHT-SFA 290

Query: 99  EIPGAKEVAIEISSFSKFAGFTGVRLGWTNIPXELYFSVINDFNRVVCTCFNGASNIAQA 158
            +PG  E  + ++ FSK    TG RLG+   P       +    ++     +GAS+I+Q 
Sbjct: 291 ALPGMWERTLTVNGFSKAFAMTGWRLGYLAGPKHF----VAACGKIQSQFTSGASSISQK 346

Query: 159 GGLACLSS--EGFMAVHSMVKYYMENAKLLLDTLAFI-GPKAYGGENAPYVWVHFPG--- 212
             +A L     G  AV +MVK + E    L+ +   + G K    + A Y+++ F     
Sbjct: 347 AAVAALGMGYAGGEAVSTMVKAFRERRDFLVKSFGELEGVKISEPQGAFYLFLDFSSYYG 406

Query: 213 ---------SKSWDLFDEILDKTNIITVPGSGFGPRGEEFLRIS 247
                      S  L   +LD+  +  VPG  FG   ++ +RIS
Sbjct: 407 AEAEGFGIIENSESLCRYLLDQAQVALVPGDAFG--DDKCIRIS 448


>GSVIVT01008900001 assembled CDS
          Length = 409

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 8/198 (4%)

Query: 42  KRTDLIFFCSPNNPTGHAATRQQLEDLVKFAKENGSIIIFDSAYALYGSNDSSXSIFEIP 101
           K T  I   +P+NPTG   TR++L  +     EN  ++  D  Y          S+  +P
Sbjct: 180 KNTRAILINTPHNPTGKMFTREELNVIASLCIENDVLVFTDEVYDKLAFEMDHISMASLP 239

Query: 102 GAKEVAIEISSFSKFAGFTGVRLGWTNIPXELYFSVINDFNRVVCTCFNGASNIAQAGGL 161
           G  E  + ++S  K    TG ++GWT  P  L + V    + +    F   + +  A   
Sbjct: 240 GMYERTVTMNSLGKTFSLTGWKIGWTVAPPHLTWGVRQAHSFLT---FATCTPMQWAAAT 296

Query: 162 ACLSSEGFMAVHSMVKYYMENAKLLLDTLAFIGPKAYGGENAPYVWV-HFP-GSKSWDLF 219
           A  + + +     + + Y     +L++ L  +G + Y      +V V H P G K    F
Sbjct: 297 ALRAPDSYY--EELKRDYSAKKAILVEGLKAVGFRVYPSSGTYFVVVDHTPFGLKDDIAF 354

Query: 220 DEILDK-TNIITVPGSGF 236
            E L K   ++ +P S F
Sbjct: 355 CEYLIKEVGVVAIPTSVF 372