Jatropha Genome Database

JcCA0055811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0055811.10 + phase: 0 /partial
         (199 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033707001 assembled CDS                                       349   4e-97
GSVIVT01019158001 assembled CDS                                       179   1e-45
GSVIVT01015850001 assembled CDS                                       154   2e-38
GSVIVT01018473001 assembled CDS                                        52   1e-07
GSVIVT01027543001 assembled CDS                                        52   2e-07
GSVIVT01027539001 assembled CDS                                        50   5e-07
GSVIVT01000764001 assembled CDS                                        50   9e-07
GSVIVT01027545001 assembled CDS                                        48   3e-06

>GSVIVT01033707001 assembled CDS
          Length = 471

 Score =  349 bits (896), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 171/188 (90%), Positives = 182/188 (96%)

Query: 1   KKYLSIIVDRVFCKCAQRLVEKLQPDALEGTAVNMEAKFSQLTLDVIGLSVFNYNFDSLT 60
           K+YLSIIVDRVFCKCA+RLVE L+ DAL G+AVNME KFSQLTLDVIGLSVFNYNFDSLT
Sbjct: 98  KRYLSIIVDRVFCKCAERLVENLRTDALNGSAVNMEEKFSQLTLDVIGLSVFNYNFDSLT 157

Query: 61  ADSPVIDAVYTALKEAEARSTDLLPYWKVKALCKIIPRQIKAEKAVTEIRQTVEELIAKC 120
           ADSPVIDAVYTALKEAEARSTDLLPYWKVKALCKIIPRQIKAE++VT IR+TVEELIAKC
Sbjct: 158 ADSPVIDAVYTALKEAEARSTDLLPYWKVKALCKIIPRQIKAEESVTVIRKTVEELIAKC 217

Query: 121 KEIVEAEGERINDEEYVNDTDPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLT 180
           KEIVE EGERI+++EYVND+DPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLT
Sbjct: 218 KEIVEREGERIDEDEYVNDSDPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLT 277

Query: 181 WTLYLLSK 188
           WTLYLLSK
Sbjct: 278 WTLYLLSK 285


>GSVIVT01019158001 assembled CDS
          Length = 638

 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 96/188 (51%), Positives = 134/188 (71%), Gaps = 2/188 (1%)

Query: 1   KKYLSIIVDRVFCKCAQRLVEKLQPDALEGTAVNMEAKFSQLTLDVIGLSVFNYNFDSLT 60
           +KY++ ++  +F +   RL +KL   A +G  V ME+ FS LTLD+IG +VFNY+FDSLT
Sbjct: 239 QKYVAAMIS-LFGQATDRLCKKLDAAASDGEDVEMESLFSHLTLDIIGKAVFNYDFDSLT 297

Query: 61  ADSPVIDAVYTALKEAEARSTDLLPYWKVKALCKIIPRQIKAEKAVTEIRQTVEELIAKC 120
            D+ +++AVY  L+EAE RS   +P+W++     I PRQ K  +A+  I  T+++LIA C
Sbjct: 298 NDTGIVEAVYAVLREAEDRSVAPIPFWEIPIWKDISPRQRKVNEALKLINSTLDDLIAIC 357

Query: 121 KEIVEAEGERINDEEYVNDTDPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLT 180
           K +VE E E    EEY+N+ DPSIL FLLAS ++VSS QLRDDL+++L+AGHET+ +VLT
Sbjct: 358 KRMVEEE-ELQFHEEYMNEKDPSILHFLLASGDDVSSKQLRDDLMTLLIAGHETSAAVLT 416

Query: 181 WTLYLLSK 188
           W  YLLSK
Sbjct: 417 WAFYLLSK 424


>GSVIVT01015850001 assembled CDS
          Length = 572

 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 121/188 (64%), Gaps = 9/188 (4%)

Query: 10  RVFCKCAQRLVEK----LQPDALEGTA---VNMEAKFSQLTLDVIGLSVFNYNFDSLTAD 62
           +VF +C++R + K    L+ + L G     +++EA+FS L LD+IGL VFNY+F S+T +
Sbjct: 181 KVFTECSERAILKFEKLLEGEHLHGGKTIELDLEAEFSNLALDIIGLGVFNYDFGSVTKE 240

Query: 63  SPVIDAVYTALKEAEARSTDLLPYWKVKALCKIIPRQIKAEKAVTEIRQTVEELIAKCKE 122
           SPVI AVY  L EAE RST  +PYWKV     I+PRQ K    +  I   ++ LI   KE
Sbjct: 241 SPVIKAVYGTLFEAEHRSTFYIPYWKVPLARWIVPRQRKFHSDLKVINDCLDGLIKNAKE 300

Query: 123 I-VEAEGERINDEEYVNDTDPSILRFLLASR-EEVSSVQLRDDLLSMLVAGHETTGSVLT 180
              E + E++   +Y N  D S+LRFL+  R  +V   QLRDDL++ML+AGHETT +VLT
Sbjct: 301 TRQETDVEKLQQRDYQNLKDASLLRFLVDMRGADVDDRQLRDDLMTMLIAGHETTAAVLT 360

Query: 181 WTLYLLSK 188
           W ++LL++
Sbjct: 361 WAVFLLAQ 368


>GSVIVT01018473001 assembled CDS
          Length = 493

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 17/185 (9%)

Query: 11  VFCKCAQRLVEKLQPDALEGTAVNMEAKFSQLTLDVIGLSVFNYNFDSLTADSPVIDAVY 70
           VF   A +LV K+   A     ++++    + TLD I    F  + +SL+      +   
Sbjct: 115 VFQDNAAKLVLKVSMVAAAKQMMDLQDMLMKSTLDSIFKVGFGVDLNSLSGSDVFGNQFI 174

Query: 71  TALKEAEA----RSTDLLPYWKVKALCKIIPRQIKAEKAVTEIRQTVEELIAKCKEIVEA 126
            A  ++      R  DLL  W++K         +  E A+    + ++  I    E++  
Sbjct: 175 KAFDDSNVIVYWRYVDLL--WRIKRFL-----NLGLEAALKHNIKVIDSFIF---ELIRC 224

Query: 127 EGERINDEEYVNDTDPSILRFLLASREEVSSVQ---LRDDLLSMLVAGHETTGSVLTWTL 183
           + E++ ++E     +  + RFLL S+++   +    LRD +LS ++AG +T+   LTW  
Sbjct: 225 KREQMKNKELDRGKEDILSRFLLESKKDPKKMNDRYLRDIILSFVIAGKDTSADTLTWFF 284

Query: 184 YLLSK 188
           YLL K
Sbjct: 285 YLLCK 289


>GSVIVT01027543001 assembled CDS
          Length = 515

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 20/186 (10%)

Query: 11  VFCKCAQRLVEKLQPDALEGTAVNMEAKFSQLTLDVIGLSVFNYNFDSLTADSPVIDAVY 70
           VF K   +L + +   A     ++++  F + TLD I    F    DS+   +       
Sbjct: 149 VFRKNGAKLAKVVSEAARSNRTMDIQGLFMKATLDSISKVAFGVKLDSMCGSNEEGTKFG 208

Query: 71  TALKEAEA----RSTDLLPYWKVKALCKIIPRQIKAEKAVTEIRQTVEELIAKCKEIVEA 126
           +A  +A A    R  D+  +W +K         I +E  +    + V++ + K   ++ +
Sbjct: 209 SAFDDASAMTLYRYVDI--FWTIKKSL-----NIGSEATLKRSIKVVDDFVYK---LIHS 258

Query: 127 EGERINDEEYVNDT----DPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWT 182
           + E + + +  ND+    D  + RFL     E+    LRD +L+ ++AG +TT + L+W 
Sbjct: 259 KTELMKNSQ--NDSSMKKDDILSRFLQLKDIEIDPKYLRDIILNFIIAGKDTTATALSWF 316

Query: 183 LYLLSK 188
           +Y+L K
Sbjct: 317 IYMLCK 322


>GSVIVT01027539001 assembled CDS
          Length = 407

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 89/185 (48%), Gaps = 17/185 (9%)

Query: 11  VFCKCAQRLVEKLQPDALEGTAVNMEAKFSQLTLDVIGLSVFNYNFDSLTADSPVIDAVY 70
           VF   A +L  K++  +  G   +++    +  LD I    F    + L   +   +A  
Sbjct: 39  VFRTNAAKLAGKVKEFSDAGRVFDVQDILMKCGLDSIFKVGFGVELNCLEGSNQEGNAFI 98

Query: 71  TALKEAEA----RSTDLLPYWKVKALCKIIPRQIKAEKAVTEIRQTVEELIAKCKEIVEA 126
            A  ++ A    R  D  P W +K         I +E ++ +  + +++ +     ++  
Sbjct: 99  KAFDDSNALVYWRYVD--PLWTLKRFL-----NIGSEASLKKSIKVMDDFVY---NLIRT 148

Query: 127 EGERINDEEYVNDTDPSILRFLLASR---EEVSSVQLRDDLLSMLVAGHETTGSVLTWTL 183
           + ++++ ++Y ND +  + RFLL S+   E+++   LRD +L+  +AG ++T + L+W  
Sbjct: 149 KRKQLSIQQYTNDKEDILSRFLLESQKDPEQMNDRYLRDIILNFTIAGKDSTANTLSWFF 208

Query: 184 YLLSK 188
           Y+L+K
Sbjct: 209 YVLTK 213


>GSVIVT01000764001 assembled CDS
          Length = 505

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 1   KKYLSIIVDRVFCKCAQRLVEKLQPDALEGTAVNMEAKFSQLTLDVIGLSVFNYNFDSLT 60
           +K++  +VD    + + RL+  L   A   + ++ +    +   D I    F Y+ D L 
Sbjct: 145 RKFIETVVD---AELSDRLIPILSTAAANNSVLDFQDILQRFAFDNICKIAFGYDPDYLL 201

Query: 61  ADSPVID---AVYTALKEAEARSTDLLP-YWKVKALCKIIPRQIKAEKAVTEIRQTVEEL 116
              P      A   A + +  R T +LP  WK+K L  +   + + + AV E+R+     
Sbjct: 202 PSLPQAKFAVAFEDAARISSERFTLILPIVWKLKRLMGVGSEK-RLKLAVAEVREF---- 256

Query: 117 IAKCKEIVEAEGERINDEEYVNDTDPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTG 176
               K IV  + E +  +  ++ TD  + RFL +   +   +   D ++S ++AG +TT 
Sbjct: 257 ---AKNIVREKKEELKHKSSLDSTD-LLSRFLSSGHSDEDFIT--DIVISFILAGRDTTS 310

Query: 177 SVLTWTLYLLSK 188
           + LTW  +LL K
Sbjct: 311 AALTWFFWLLFK 322


>GSVIVT01027545001 assembled CDS
          Length = 515

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 20/186 (10%)

Query: 11  VFCKCAQRLVEKLQPDALEGTAVNMEAKFSQLTLDVIGLSVFNYNFDSLTADSPVIDAVY 70
           VF K   +L   +   A     ++++  F + TLD I    F    DS+   +       
Sbjct: 149 VFRKNGAKLAIVVSEAASSNQTMDIQDLFMKATLDSIFKVAFGVELDSMCGSNEEGTKFG 208

Query: 71  TALKEAEA----RSTDLLPYWKVKALCKIIPRQIKAEKAVTEIRQTVEELIAKCKEIVEA 126
           +A  +A A    R  D+  +W +K         I +E  +    + V++ + K   ++ +
Sbjct: 209 SAFDDASAMTLYRYVDI--FWTIKKSL-----NIGSEATLKRSIKVVDDFVYK---LIHS 258

Query: 127 EGERINDEEYVNDT----DPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWT 182
           + E + + +  ND+    D  + RFL     E+    LRD +L+ ++AG +TT + L+W 
Sbjct: 259 KTELMKNSQ--NDSSMKKDDILSRFLQLKDIEIDPKYLRDIILNFIIAGKDTTATALSWF 316

Query: 183 LYLLSK 188
           +Y+L K
Sbjct: 317 IYMLCK 322