Jatropha Genome Database

JcCA0051561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0051561.10 - phase: 0 /partial
         (113 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016383001 assembled CDS                                       146   2e-36
GSVIVT01024817001 assembled CDS                                       139   2e-34
GSVIVT01034023001 assembled CDS                                       134   7e-33
GSVIVT01033237001 assembled CDS                                       108   4e-25
GSVIVT01019914001 assembled CDS                                       107   9e-25

>GSVIVT01016383001 assembled CDS
          Length = 231

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 82/101 (81%)

Query: 1   MCIGATAARALKSVLQGILLSNEGEKLHSMNLLMFMXXXXXXXXXXXXXXMERDVVGITI 60
           MCIGATAARALKSVLQGILLS+EGEKL+SMNLL++M              ME +VVGIT+
Sbjct: 84  MCIGATAARALKSVLQGILLSSEGEKLNSMNLLLYMAPIAVVFLLPATLFMEENVVGITL 143

Query: 61  ALARDDMRFIVYLTFNSALAYFVNLANFLVTKHTSALTLQV 101
           ALARDD++ + YL FNSALAYFVNL NFLVTKHTSALTLQV
Sbjct: 144 ALARDDIKIVWYLLFNSALAYFVNLTNFLVTKHTSALTLQV 184


>GSVIVT01024817001 assembled CDS
          Length = 305

 Score =  139 bits (350), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 79/101 (78%)

Query: 1   MCIGATAARALKSVLQGILLSNEGEKLHSMNLLMFMXXXXXXXXXXXXXXMERDVVGITI 60
           +CI ATAARALKSVLQGILLS+EGEKL+SMNLLM+M              ME +VV IT+
Sbjct: 158 ICIAATAARALKSVLQGILLSSEGEKLNSMNLLMYMAPVAVAFLLPAALLMEENVVNITL 217

Query: 61  ALARDDMRFIVYLTFNSALAYFVNLANFLVTKHTSALTLQV 101
           ALARDD+R + YL FNSALAY VNL NFLVTKHTSALTLQV
Sbjct: 218 ALARDDVRILWYLIFNSALAYLVNLTNFLVTKHTSALTLQV 258


>GSVIVT01034023001 assembled CDS
          Length = 306

 Score =  134 bits (338), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 78/101 (77%)

Query: 1   MCIGATAARALKSVLQGILLSNEGEKLHSMNLLMFMXXXXXXXXXXXXXXMERDVVGITI 60
           +CI ATAARA KSVLQG LL++EGEKL+SMNLL++M              ME +VV IT+
Sbjct: 159 ICISATAARAFKSVLQGKLLTSEGEKLNSMNLLLYMAPIAVAFLIPATLIMEENVVAITL 218

Query: 61  ALARDDMRFIVYLTFNSALAYFVNLANFLVTKHTSALTLQV 101
           ALARDD++ I YL FNSALAYFVNL NFLVTKHTSALTLQV
Sbjct: 219 ALARDDIKIIWYLLFNSALAYFVNLTNFLVTKHTSALTLQV 259


>GSVIVT01033237001 assembled CDS
          Length = 263

 Score =  108 bits (271), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/101 (56%), Positives = 70/101 (69%)

Query: 1   MCIGATAARALKSVLQGILLSNEGEKLHSMNLLMFMXXXXXXXXXXXXXXMERDVVGITI 60
           MCI ATAARA KSVLQG+LLS+EGEKL+SMNLL++M              ME +V+  TI
Sbjct: 116 MCISATAARAFKSVLQGVLLSSEGEKLNSMNLLLYMSPIAVLVLLPAALIMEPNVLDATI 175

Query: 61  ALARDDMRFIVYLTFNSALAYFVNLANFLVTKHTSALTLQV 101
           +L ++     + L  NSA+AY  NL+NFLVTKHTS LTLQV
Sbjct: 176 SLGKEHKFMWMLLLVNSAMAYSANLSNFLVTKHTSPLTLQV 216


>GSVIVT01019914001 assembled CDS
          Length = 352

 Score =  107 bits (268), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 68/101 (67%)

Query: 1   MCIGATAARALKSVLQGILLSNEGEKLHSMNLLMFMXXXXXXXXXXXXXXMERDVVGITI 60
           +CIG+TA RALKSV+QGILL++E EKLHSMNLL++M              +E +V   T+
Sbjct: 201 ICIGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMAALILLPFTLYIEGNVAAFTV 260

Query: 61  ALARDDMRFIVYLTFNSALAYFVNLANFLVTKHTSALTLQV 101
             AR D   I  L  N+ +AY VNL NFLVTKHTSALTLQV
Sbjct: 261 EKARGDSFIIFLLIGNATVAYLVNLTNFLVTKHTSALTLQV 301