Jatropha Genome Database

JcCA0046261.60
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046261.60 + phase: 0 /TE/partial
         (1707 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018780001 assembled CDS                                       213   5e-55
GSVIVT01012583001 assembled CDS                                        69   2e-11
GSVIVT01000901001 assembled CDS                                        67   1e-10
GSVIVT01021619001 assembled CDS                                        54   6e-07

>GSVIVT01018780001 assembled CDS
          Length = 1567

 Score =  213 bits (543), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 113/287 (39%), Positives = 165/287 (57%), Gaps = 4/287 (1%)

Query: 964  NAPATFQRCMVSIFLDFAEEIIEVFMDDFTVYGNYFDECLTNLTKVLKRCIESNLVLNYE 1023
            N PA F   M  +F  + ++ + VF+DD  +Y    +E   +L   L       L    +
Sbjct: 972  NVPAAFMDLMNRVFRAYLDQFVIVFVDDILIYSRSLEEHKQHLVTTLGTLRRHQLYGKLD 1031

Query: 1024 KCHFMVDQGLILGHIVSSRGIEVDKAKIDVIKSLPYPASVREIRSFLGHAGFYRRFIKDF 1083
            K  F + +   LGH+VS  GI VD +K++ ++    P +V E+RSFLG AG+YRRF++DF
Sbjct: 1032 KSEFWLTEVNFLGHVVSEAGIAVDHSKVEAVQEWQRPTNVFEVRSFLGLAGYYRRFVEDF 1091

Query: 1084 SKIAQPLCKLLQKDVSFVFDEECRKAFDMLKEKLISAPIVQPSNWNYPFEIMCDASNYVV 1143
            S+IA P+ +L +K V F ++EEC  AF  LK KL +AP++        F I CDAS   +
Sbjct: 1092 SRIAAPMTRLTRKGVKFDWNEECENAFQELKRKLTTAPVLTAPISGELFTIYCDASTVGL 1151

Query: 1144 GAVLGQRIEKNPHVIYYASRTLDNAQCNYSTTEKELLAIVFALEKFRSYLLGTKVIVFSD 1203
            G VL Q+      V+ YASR L   + NY   + EL A+VFAL+ +R YL G K  V+SD
Sbjct: 1152 GCVLMQQ----GKVVAYASRQLKQHERNYPAHDLELAAVVFALKTWRHYLYGEKFEVYSD 1207

Query: 1204 HAALRYLLKKKDSKPRLIRWILLLQEFDIEIRDKKGSENLVADHLSR 1250
            H +L+Y+  +KD   R  RW+  L+++D  +  + G  N+VAD LSR
Sbjct: 1208 HKSLKYIFTQKDLNSRQRRWMETLEDYDFALHYQPGKANVVADALSR 1254


>GSVIVT01012583001 assembled CDS
          Length = 96

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query: 1412 IDFMGPFPSSFGNS-YILLAVDYVSKWVEAKATRTNDAKTVVNFVKSHIFSRFGIPRAII 1470
            +D +GP P++     ++L+A DY SKWVEA+A      K +  F+  +I  RFGIP+ II
Sbjct: 1    MDIVGPLPTAGAQKKFLLIATDYFSKWVEAEAYANIKDKDITKFIWKNIIYRFGIPQEII 60

Query: 1471 SDRGTHFCNKIMENLFKKYGITHRVSTAYHPQTSGQ 1506
            +D G  F +   +  + +  I +  ST  +P+  G+
Sbjct: 61   ADNGLQFDSITFQTFYSELKIKNLYSTPRYPKAMGK 96


>GSVIVT01000901001 assembled CDS
          Length = 93

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 39/51 (76%)

Query: 1135 MCDASNYVVGAVLGQRIEKNPHVIYYASRTLDNAQCNYSTTEKELLAIVFA 1185
            MCDAS++ +GAVL QR +  P+VIYYA + L+ AQ NY+T EKELL +V +
Sbjct: 1    MCDASDFAIGAVLRQREDGKPYVIYYARKALNEAQRNYTTIEKELLVVVVS 51


>GSVIVT01021619001 assembled CDS
          Length = 69

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 32/49 (65%)

Query: 971  RCMVSIFLDFAEEIIEVFMDDFTVYGNYFDECLTNLTKVLKRCIESNLV 1019
            RC++SI  D  E  ++VFMDD  +Y   FD+CL NL +VLKR I   L+
Sbjct: 12   RCLLSIISDMVERKMKVFMDDLKIYVKTFDDCLLNLKRVLKRRIAKFLI 60