Jatropha Genome Database

JcCA0046261.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046261.50 + phase: 2 /TE/partial
         (169 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000641001 assembled CDS                                       128   2e-30
GSVIVT01012382001 assembled CDS                                       124   3e-29
GSVIVT01028343001 assembled CDS                                       113   5e-26
GSVIVT01009548001 assembled CDS                                        81   2e-16
GSVIVT01015960001 assembled CDS                                        81   2e-16
GSVIVT01019138001 assembled CDS                                        67   4e-12
GSVIVT01013655001 assembled CDS                                        54   3e-08
GSVIVT01013341001 assembled CDS                                        52   2e-07
GSVIVT01026124001 assembled CDS                                        51   2e-07

>GSVIVT01000641001 assembled CDS
          Length = 947

 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 86/142 (60%)

Query: 14  DSDWAGSLDDMKSTTGFCFSLGSAVICWGTRKQASVAQSTXXXXXXXXXXXXXXXIWLRK 73
           DSD+AG  D+ +ST+G+ F LG+  + W ++KQ  V  ST               IWLRK
Sbjct: 305 DSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEAEFVAATVCACQAIWLRK 364

Query: 74  VLVDLNFQQENPTKILCDNKSAVAMVKNPIFHGKTKHIKIKYHAIREAEKENEIQIIHCN 133
           +L +L+ +Q   T I CDN S + + KNP+ HG++KHI +KY+ +R+   +  I +++C 
Sbjct: 365 ILEELHLKQVGATTIFCDNSSTIKLSKNPVLHGRSKHIDVKYYFLRDLSNDGVIDLVYCR 424

Query: 134 SEDQTADIFTKALQKPRFEFLR 155
           SE+Q ADIFTK L+   F  LR
Sbjct: 425 SENQVADIFTKPLKLAVFLELR 446


>GSVIVT01012382001 assembled CDS
          Length = 952

 Score =  124 bits (310), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 84/146 (57%)

Query: 14  DSDWAGSLDDMKSTTGFCFSLGSAVICWGTRKQASVAQSTXXXXXXXXXXXXXXXIWLRK 73
           DSDWAG+  D +STTG+C  +G  ++ W ++KQ  VA+S+               +WL+ 
Sbjct: 799 DSDWAGNTIDRRSTTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKN 858

Query: 74  VLVDLNFQQENPTKILCDNKSAVAMVKNPIFHGKTKHIKIKYHAIREAEKENEIQIIHCN 133
           +L DL F   +P K+ CDN++A+ +  NP+FH +TKHI++  H IR+  +   IQ  +  
Sbjct: 859 LLTDLGFSPTSPMKLFCDNQAAMHIAANPVFHERTKHIEVDCHFIRQQVQSKVIQTHYIR 918

Query: 134 SEDQTADIFTKALQKPRFEFLRNRLG 159
           S DQ AD FTK L    F  L  +LG
Sbjct: 919 SSDQLADAFTKVLSSTVFHRLMFKLG 944


>GSVIVT01028343001 assembled CDS
          Length = 2295

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 83/137 (60%)

Query: 23   DMKSTTGFCFSLGSAVICWGTRKQASVAQSTXXXXXXXXXXXXXXXIWLRKVLVDLNFQQ 82
            D +ST+G+C  +G  +I W ++KQ  VA+S+               IWLR +L +L F +
Sbjct: 1466 DRRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFGK 1525

Query: 83   ENPTKILCDNKSAVAMVKNPIFHGKTKHIKIKYHAIREAEKENEIQIIHCNSEDQTADIF 142
            +   K++CDN++A+ +  NP+FH +TKHI++  H IRE      +     NS DQ ADIF
Sbjct: 1526 DEQMKLICDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADIF 1585

Query: 143  TKALQKPRFEFLRNRLG 159
            TK+L+ PR +++ N+LG
Sbjct: 1586 TKSLRGPRIKYICNKLG 1602


>GSVIVT01009548001 assembled CDS
          Length = 849

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 7/153 (4%)

Query: 14  DSDWAGSLDDMKSTTGFCFSLGSAVICWGTRKQASVAQSTXXXXXXXXXXXXXXXIWLRK 73
           +SD+ G  DD KST+G+ F L    I W + KQ+ +A ST               +WLRK
Sbjct: 666 NSDFNGCSDDCKSTSGYIFMLTGGAISWKSVKQSLIAFSTMYAKFVACYGASSQVVWLRK 725

Query: 74  VLVDLNFQQE--NPTKILCDNKSAVAMVKNPIFHGKTKHIKIKYHAIREAEKENEIQIIH 131
           ++ +L        P  I CDN + V   KN      +KH++IKY  +++  K+ +I I H
Sbjct: 726 LISELQVVDSIFRPIVIYCDNNATVFYSKNNKISTSSKHMEIKYLIVKDLVKKEDIVIKH 785

Query: 132 CNSEDQTADIFTKALQKPRFE-----FLRNRLG 159
             +E   AD  TK L+   F+       R+R+G
Sbjct: 786 IRTESMLADPLTKGLKPIMFKEHVVNMGRSRIG 818


>GSVIVT01015960001 assembled CDS
          Length = 1205

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 56/86 (65%)

Query: 69  IWLRKVLVDLNFQQENPTKILCDNKSAVAMVKNPIFHGKTKHIKIKYHAIREAEKENEIQ 128
           +W+R++L +L     +P K+ CDNK+ +++  NP+ H +TKH+++  H I+E      + 
Sbjct: 1   MWIRRLLEELKMTGSSPMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGLVC 60

Query: 129 IIHCNSEDQTADIFTKALQKPRFEFL 154
           + +  +E+Q AD+FTK L K +F+FL
Sbjct: 61  MTYIPTEEQVADVFTKGLHKRQFDFL 86


>GSVIVT01019138001 assembled CDS
          Length = 149

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 46/62 (74%), Gaps = 4/62 (6%)

Query: 75  LVDLNFQ----QENPTKILCDNKSAVAMVKNPIFHGKTKHIKIKYHAIREAEKENEIQII 130
           +V+ NF+    ++  T +LCDNKSA+A+ KN +FH +T+HI +KYH I+EA  + E+Q++
Sbjct: 1   MVEKNFRRHQGEDEATYLLCDNKSAIAIAKNYVFHSRTRHIAVKYHFIKEAISDGEVQLM 60

Query: 131 HC 132
           +C
Sbjct: 61  YC 62


>GSVIVT01013655001 assembled CDS
          Length = 4396

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 39/85 (45%)

Query: 14   DSDWAGSLDDMKSTTGFCFSLGSAVICWGTRKQASVAQSTXXXXXXXXXXXXXXXIWLRK 73
            DSDWAG+ DD  ST+ +   LG   I W ++KQ +VA+S+                W+  
Sbjct: 4303 DSDWAGNKDDFTSTSAYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICS 4362

Query: 74   VLVDLNFQQENPTKILCDNKSAVAM 98
            +L +L         I CDN  A  +
Sbjct: 4363 LLTELGVTLPQQPVIYCDNVGATHL 4387


>GSVIVT01013341001 assembled CDS
          Length = 503

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%)

Query: 11  SVVDSDWAGSLDDMKSTTGFCFSLGSAVICWGTRKQASVAQSTXXXXXXXXXXXXXXXIW 70
           +  D+DWAGS++D +ST+G+C  +   +I W ++KQ  VA+S+               +W
Sbjct: 39  AFTDADWAGSIEDRRSTSGYCTFVFGNLITWRSKKQNVVARSSAEVKFRSIAHGICEVLW 98

Query: 71  LRKVLVDL 78
           +++VL +L
Sbjct: 99  IKRVLEEL 106


>GSVIVT01026124001 assembled CDS
          Length = 1018

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 69  IWLRKVLVDLNFQQENPTKIL-CDNKSAVAMVKNPIFHGKTKHIKIKYHAIREAEKENEI 127
           IWL  +L +L  +QE   +IL  D+ SA+ + KN +FH K+KHI+ KYH IR   ++  +
Sbjct: 2   IWLHGLLDELAKKQE--MRILHSDSHSAIFLAKNSVFHSKSKHIQTKYHFIRYLIEDKLV 59

Query: 128 QIIHCNSEDQTADIFTKALQKPRFEFLRNRLGVCLNSCIKE 168
            +         AD+ TK +   + +     +   +N   KE
Sbjct: 60  ILEKIYGSKNPADMLTKGVTIEKLKLCTASIAATVNGQAKE 100