Jatropha Genome Database

JcCA0046261.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046261.40 - phase: 0 
         (596 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032764001 assembled CDS                                       647   0.0  
GSVIVT01014200001 assembled CDS                                       253   2e-67

>GSVIVT01032764001 assembled CDS
          Length = 632

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/560 (55%), Positives = 409/560 (73%), Gaps = 13/560 (2%)

Query: 25  PDHYFKNLSPTLKTTFSKPKYKEYFELIRPLPFDHLTPSYAHHIIHHTFANTVNRPPYTV 84
           PDH+ K+ S   ++T  +P  +E+FEL +PLP DHLTP+    I+ H FANT+  PP +V
Sbjct: 56  PDHFTKSRS---QSTLQRPSGQEFFELRQPLPSDHLTPACTVPILDHYFANTIGSPPVSV 112

Query: 85  PYDPPTGCPAPWLRVALEFRANSRGDQYDRIAGLWLGGAELLRTSTAEPTESGIYWSVRK 144
           PY PP  C APW RV LE  A+ +G+QYDRIA +WLGG E+LRTSTAEP E+GI+W+V+K
Sbjct: 113 PYKPPRHCHAPWSRVVLEVHADCKGEQYDRIAAVWLGGVEILRTSTAEPDEAGIFWNVQK 172

Query: 145 DITRYSYLLKQRNLNFSIMLENIVNDVYTGVYHIDVTIFYYKDTTVRAPLMGNNFISLFT 204
           DITRYS LLK  N + ++MLENIV+D++TGVYH+ V++ YYKD  V AP   N       
Sbjct: 173 DITRYSSLLKLSNQDLTMMLENIVDDIFTGVYHVQVSLLYYKDKGVTAPADKN-----LG 227

Query: 205 KKQGLIREERLANGVYESPADLIIPISSFHDSKGHWFRIEGESDAHLKKLRFPSNTHRAI 264
           ++ G     R  + +YE PADLI+PIS+  D +G WFRI GESD   K+++ P NT RA+
Sbjct: 228 RELGF----RFGSPLYEPPADLIVPISNNGD-RGFWFRINGESDVRTKRVQIPRNTRRAV 282

Query: 265 LELYVSFHGNDEFWYSNPSNTYIRMNNLTTLRGNGAFREVFVTIDGMFVDSEVPFPVIFT 324
           +ELYVSFHGNDEFWYSNP N+YIR NNLTT RGNGAFREV+VT+DG FV SEVP+PVIFT
Sbjct: 283 IELYVSFHGNDEFWYSNPPNSYIRNNNLTTDRGNGAFREVYVTVDGNFVGSEVPYPVIFT 342

Query: 325 GGINPLFWEPAVAIGAFDLPTYDFDLTPFLGILLDGKDHMIGVGVSDSIPYWLVDANLHL 384
           GGINPLFWEP VAIGAFDLP+YDF+LTPFLG+LLDG  H  G+GVS SIP+WLVDANLHL
Sbjct: 343 GGINPLFWEPVVAIGAFDLPSYDFELTPFLGLLLDGNTHNFGIGVSYSIPFWLVDANLHL 402

Query: 385 WLDTGLASVEAKSVVYENPGSSVKRQEEFRMLDGSFAIKGTRKTQLVGWIKSSLGNFTTS 444
           WLD    +V+AK V  ++P  ++   ++F+ LDG+F ++G+RK + VGW+KSS GN TT 
Sbjct: 403 WLDHQSEAVQAKLVSQKSPALTLTSSQKFKRLDGTFELEGSRKGRYVGWVKSSEGNLTTI 462

Query: 445 VMHQYKFRSSVRFGKNGNHKNVKQNLKSKREVKVMNEMGILLSRATVKRKYPLKVVTLNL 504
           V  + KFR++++F ++GNHK V+Q +KSK +VKV+ E  ILLSR  +K +YPLK++T   
Sbjct: 463 VSRKLKFRNAIQFRRDGNHKTVEQKIKSKTQVKVLTETRILLSRPFIKWRYPLKIITSTR 522

Query: 505 PGKKKDTYKLITNVSHAFFHQYSKGMFSSSVNNKQVANGWMEVKDHDVVAGEAVTNQTLT 564
           PG  + T  + TNV+ +   +++ G  S  V N QV  G+MEVKDH VV+G + T Q+  
Sbjct: 523 PGSGQGTNLITTNVTESLGKRFANGNSSIFVYNSQVCGGYMEVKDHSVVSGVSDTTQSFR 582

Query: 565 WRDDSGCYVRSVAAIDGSLV 584
            RD S C+ R VA+ +G L+
Sbjct: 583 VRDGSRCFSRVVASTNGKLL 602


>GSVIVT01014200001 assembled CDS
          Length = 1560

 Score =  253 bits (646), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 144/385 (37%), Positives = 214/385 (55%), Gaps = 8/385 (2%)

Query: 213  ERLANGVYESPADLIIPIS-SFHDSKGHWFRIEGESDAHLKKLRFPSNTHRAILELYVSF 271
            E+LA+G Y S ADLI+PIS +   + G WF IE  +D  +KK + P N +RA+LE+Y+SF
Sbjct: 676  EKLASG-YGSWADLILPISRNLPLNDGLWFEIENSTDLEVKKFKIPRNAYRAVLEVYLSF 734

Query: 272  HGNDEFWYSNPSNTYIRMNNLTTLRGNGAFREVFVTIDGMFVDSEVPFPVIFTGGINPLF 331
            H NDEFWYSNP N YI  NNLT   GNG FREV V +DG  V +  PF VI+TGG+NPL 
Sbjct: 735  HENDEFWYSNPPNDYISANNLTGTPGNGPFREVLVGLDGKLVGAVWPFTVIYTGGVNPLL 794

Query: 332  WEPAVAIGAFDLPTYDFDLTPFLGILLDGKDHMIGVGVSDSIPYWLVDANLHLWLDTGLA 391
            W P   IG+FDLP+Y+ ++TPFLG +LDGK H     V++++  W +DANLH+WLD    
Sbjct: 795  WRPITGIGSFDLPSYNIEITPFLGKILDGKTHTFEFSVTNALNVWYIDANLHIWLDHKST 854

Query: 392  SVEAKSVVYENPGSSVKRQEEFRMLDGSFAIKGTRKTQLVGWIKSSLGNFTTSVMHQYKF 451
              E + + + +  S        + L+ SF    +R     GW+KSS G  TT  + ++K+
Sbjct: 855  QTEGRLLGHGSGSSLSTSTLYMKGLNASFLTLSSRSISSTGWVKSSHGKMTTQSIQEFKY 914

Query: 452  RSSVRFGKNGNHKNVKQNLKSKREVKVMNEMGILLSRATVKRKYPLKVVTLNLPGKKKDT 511
             + +  G +G+ + V Q +     V          S  + K  +PL + + N+  +   T
Sbjct: 915  INLMVMGNDGDLQTVNQTIHFNDGVYTKFPYSFSYSINSSKL-FPLYLYSDNV-DRGNGT 972

Query: 512  YKLITNVSHAFFHQYSKGMFSS----SVNNKQVANGWMEVKDHDVVAGEAVTNQTLTWRD 567
            Y  + NV+  F  + S    SS     + N Q   G M +K++ V +G   T +   +  
Sbjct: 973  YLSLANVTLGFNEERSNSAGSSFSKTFLENLQTGQGSMIIKNNLVSSGLGSTQEVYNYGC 1032

Query: 568  DSGCYVRSVAAIDGSLVRDNSTYVC 592
               CY R+V++ + +++ D  +  C
Sbjct: 1033 PKFCYFRNVSSSNYTILYDTVSSSC 1057



 Score =  251 bits (641), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 206/365 (56%), Gaps = 17/365 (4%)

Query: 238 GHWFRIEGESDAHLKKLRFPSNTHRAILELYVSFHGNDEFWYSNPSNTYIRMNNLT-TLR 296
           G WF I+ ++    K+   P N +RA+LE+YVSFH NDEFWY NP N YI +NNLT ++ 
Sbjct: 158 GLWFEIQNQTHVEGKEFIIPKNAYRAVLEVYVSFHENDEFWYLNPPNDYIDVNNLTGSIP 217

Query: 297 GNGAFREVFVTIDGMFVDSEVPFPVIFTGGINPLFWEPAVAIGAFDLPTYDFDLTPFLGI 356
           GN AFREV V++DG  V +  PF VI TGG+NPL W P  AIG+F+LP+YD ++TPFLG 
Sbjct: 218 GNSAFREVLVSLDGELVGAVWPFTVIHTGGVNPLLWRPISAIGSFNLPSYDIEITPFLGN 277

Query: 357 LLDGKDHMIGVGVSDSIPYWLVDANLHLWLDTGLASVEAKSVVYENPGSSVKRQEEFRML 416
           LLDGK H +G  V++++  W +DANLHLWLD      + K + + +  SS         L
Sbjct: 278 LLDGKSHGLGFSVTNALNVWFIDANLHLWLDNKSKRTQGKLLGHNSKSSSSISTSSMEGL 337

Query: 417 DGSFAIKGTRKTQLVGWIKSSLGNFTTSVMHQYKFRSSVRFGKNGNHKNVKQNLKSKREV 476
           + SF I  TR     GW+KSS G  TT     + F + +   KNGN + V Q       +
Sbjct: 338 NASFLIHSTRSISSRGWVKSSHGKMTTKTTQDFNFMNKMDISKNGNLQIVNQ------RI 391

Query: 477 KVMNEMGILLSRATV-----KRKYPLKVVTLNLPGKKKDTYKLITNVSHAFFHQYSKGMF 531
           +V N++   L  ++       + +PL  +  ++  +   ++   + +   F  + SK + 
Sbjct: 392 QVTNDLHTTLPSSSTYVVKSTKTFPL-YLYYDIINQGNGSFVAKSKIKLGFNEKRSKKLG 450

Query: 532 SSS----VNNKQVANGWMEVKDHDVVAGEAVTNQTLTWRDDSGCYVRSVAAIDGSLVRDN 587
           S+S    + N Q   G M V+ + V  G A T+Q   + D  GCY R+V++ +G+++ D 
Sbjct: 451 STSSKIALKNLQKGRGNMHVEGNLVTNGTAATSQVYEYVDPKGCYFRNVSSSNGTILYDE 510

Query: 588 STYVC 592
           ++  C
Sbjct: 511 ASNSC 515



 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 2/107 (1%)

Query: 43  PKYKEYFELIRPLPFDHLTPSYAHHIIHHTFANTVNRPPYTVPYDPPTGCPAP-WLRVAL 101
           P    +FE+ +P+      P  +  ++ H FA+T  +PP  VPY PP+ CP+  + ++ L
Sbjct: 46  PSPTRFFEVTKPVKVPKTKPC-SSLVLQHDFASTYGKPPVIVPYSPPSHCPSQNFSKIVL 104

Query: 102 EFRANSRGDQYDRIAGLWLGGAELLRTSTAEPTESGIYWSVRKDITR 148
           E+ A  +G Q+DRI G+WL G ELLR+ TAEP  +GI W+V KDITR
Sbjct: 105 EWTATCKGRQFDRIFGVWLDGVELLRSCTAEPKATGIVWTVEKDITR 151



 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 2/99 (2%)

Query: 48  YFELIRPLPFDHLTPSYAHHIIHHTFANTVNRPPYTVPYDPPTGCPAP-WLRVALEFRAN 106
           +FE+ +P+      P  +  ++ H F  T  +PP   PY PP  CP+  + ++ LE+ A 
Sbjct: 576 FFEVTKPIKVPKTKPC-SSLVLQHDFGYTYGKPPVLAPYSPPAHCPSQNFSKIVLEWSAT 634

Query: 107 SRGDQYDRIAGLWLGGAELLRTSTAEPTESGIYWSVRKD 145
            +G Q+DRI G+WLGG ELLR+ TAEPT +GI W+V+KD
Sbjct: 635 CKGRQFDRIFGVWLGGVELLRSCTAEPTATGIVWTVKKD 673