Jatropha Genome Database

JcCA0046261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046261.10 - phase: 0 
         (77 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010274001 assembled CDS                                       104   1e-23
GSVIVT01000230001 assembled CDS                                        77   1e-15
GSVIVT01036750001 assembled CDS                                        47   1e-06

>GSVIVT01010274001 assembled CDS
          Length = 77

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 59/77 (76%)

Query: 1  MKNPMRPFSAVXXXXXXXVATEIGSKMAEARTCESQSHKFKGTCLSETNCANVCKTEGFT 60
          MK   R FSA        +ATE+G  +AEARTCESQSH+FKGTC+ ++NCA VC+TEGF 
Sbjct: 1  MKGSQRLFSAFLLVILLFMATEMGPMVAEARTCESQSHRFKGTCVRQSNCAAVCQTEGFH 60

Query: 61 GGDCRGLRRRCFCTRHC 77
          GG+CRG RRRCFCT+HC
Sbjct: 61 GGNCRGFRRRCFCTKHC 77


>GSVIVT01000230001 assembled CDS
          Length = 75

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 42/50 (84%)

Query: 28 AEARTCESQSHKFKGTCLSETNCANVCKTEGFTGGDCRGLRRRCFCTRHC 77
          +EAR CESQSHKF+G C+ + NCA VC+ EGF+GG C+GLRRRCFCT+ C
Sbjct: 26 SEARVCESQSHKFEGACMGDHNCALVCRNEGFSGGKCKGLRRRCFCTKLC 75


>GSVIVT01036750001 assembled CDS
          Length = 55

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 26/38 (68%)

Query: 23 IGSKMAEARTCESQSHKFKGTCLSETNCANVCKTEGFT 60
          + S+  EAR CESQSH F+G C+S  NCA VC+ E F 
Sbjct: 1  MASQETEARLCESQSHWFRGVCVSNHNCAVVCRNEHFV 38