Jatropha Genome Database

JcCA0046101.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046101.30 + phase: 0 /partial
         (219 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033327001 assembled CDS                                       259   5e-70
GSVIVT01025079001 assembled CDS                                        71   5e-13
GSVIVT01008740001 assembled CDS                                        63   1e-10
GSVIVT01005195001 assembled CDS                                        56   1e-08

>GSVIVT01033327001 assembled CDS
          Length = 1669

 Score =  259 bits (663), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 137/216 (63%), Positives = 164/216 (75%), Gaps = 1/216 (0%)

Query: 1   GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
           G TE ++++ FSF TDEEVRK+SF KIT P +LD V RPV GGLYDPALG + E T C++
Sbjct: 7   GTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQS 66

Query: 61  CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
           CGQR   CPGHCGHIDLVS VYNPLLFN LH LLQ+TCF+C HF+     V K V QLEL
Sbjct: 67  CGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLEL 126

Query: 121 IVKGDIVGAKRLDSVLPSETLYPEESDGSHESC-STVHSGAQCHNGEHMKQKEWTSLQFS 179
           I KGD+VGAK LDS+ PSE+ YPE+SDGSH SC STV+S A+ +   H+KQ+EWTSLQ  
Sbjct: 127 ISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCI 186

Query: 180 EATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGWFY 215
           EA SV++ FL  K + CKNC A +P +TKP FGWF+
Sbjct: 187 EAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFH 222


>GSVIVT01025079001 assembled CDS
          Length = 1819

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 11/129 (8%)

Query: 6   IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
           I+SI F+  ++ E+ K + V++      D   +P+  GL DP +GP ++   C TC    
Sbjct: 21  IESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLDPRMGPANKNGTCATCLGNF 80

Query: 66  TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCF-----------HFRIHRGQVDKC 114
            +CPGHCG++ L  PVYN    + +  +L+  C  C            + +  R Q  + 
Sbjct: 81  RDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEKASKDYLKKMRSQKMEA 140

Query: 115 VKQLELIVK 123
           +K+ EL+ K
Sbjct: 141 LKKAELMKK 149


>GSVIVT01008740001 assembled CDS
          Length = 1565

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 9   ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTNC 68
           + F  L+ +E+R+ S V+I      +   +P  GGL DP LG +     C+TC   +  C
Sbjct: 18  VQFGILSPDEIRQMSVVQIEHSETTER-GKPKPGGLSDPRLGTIDRKMKCETCTANMAEC 76

Query: 69  PGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDIVG 128
           PGH GH++L  P+++      +  +++  CF C          D+  + ++ I K     
Sbjct: 77  PGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKI-----LADELTENVKWISKSKFAN 131

Query: 129 AKRL 132
            K L
Sbjct: 132 MKSL 135


>GSVIVT01005195001 assembled CDS
          Length = 1607

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 38  RPVLGGLYDPALGPLSEGTICKTCGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRT 97
           +P  GGL DP LG + +   C TC   +  CPGH GH++L  P+++      +  +L+  
Sbjct: 5   KPKRGGLADPRLGTMDKTQKCDTCMGSMAACPGHFGHLELAKPMFHTGFMRTVLTVLRCV 64

Query: 98  CFYCFHFRIHRGQVDKCVKQLELI 121
           CF C   RI   + D   KQ  LI
Sbjct: 65  CFSC--SRILSDEEDPKFKQALLI 86