Jatropha Genome Database

JcCA0046101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046101.10 + phase: 0 /pseudo/partial
         (355 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033326001 assembled CDS                                       401   e-112
GSVIVT01022423001 assembled CDS                                       343   6e-95
GSVIVT01009645001 assembled CDS                                       141   5e-34
GSVIVT01031915001 assembled CDS                                        90   2e-18

>GSVIVT01033326001 assembled CDS
          Length = 387

 Score =  401 bits (1031), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/345 (59%), Positives = 235/345 (68%), Gaps = 48/345 (13%)

Query: 11  PLGVLFFLSGFVVNLIQAICFVVIRPLSKNTYRKINRXXXXXXXXXXXXXXXXXXGIQIQ 70
           PLG+LF  SG VVNLIQA+CF+++RPLSK+TYR+INR                  G++IQ
Sbjct: 11  PLGLLFLTSGLVVNLIQAVCFILVRPLSKSTYRRINRVVAELLWLELVWLIDWWAGVKIQ 70

Query: 71  LYTDQETFRLMGKAILXLIRMFSASFSLMLLEYKYESSSEXXXXXXXXXXXXXSGKEHAL 130
           LYTD ETFRLMG                                           KEHAL
Sbjct: 71  LYTDPETFRLMG-------------------------------------------KEHAL 87

Query: 131 VICNHRSDIDWLVGWVLAQRSGCLGSALAVMKKSSKLLPVIGWSMWFSEYLFLERSWAKD 190
           +I NHRSDIDWLVGWVLAQRSGCLGS LAVMKKSSK LPVIGWSMWFSEYLFLER+WAKD
Sbjct: 88  LISNHRSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKD 147

Query: 191 ESTLKSGLQRLKDFPRPFWLALFVEGTRFTQAKLLAAQEYAASAGLPIPRNVLIPRTKGF 250
           ES +KSGL RLKD+P+PFWLALFVEGTRFTQAKLLAAQEYA ++GLP+PRNVLIPRTKGF
Sbjct: 148 ESIIKSGLLRLKDYPQPFWLALFVEGTRFTQAKLLAAQEYATASGLPVPRNVLIPRTKGF 207

Query: 251 VSAVSKYALFCPSHLXCNSSYPQKFTSTYNAQNVQGPILSVTLLQVHVHLKRHLMKDLPE 310
           VSAVS    F P+      + P+   S    +  +G   +     VHVH+KRHLMK+LPE
Sbjct: 208 VSAVSHMRSFVPAVYDVTVAIPKTQPSPTMLRLFKGQPSA-----VHVHIKRHLMKELPE 262

Query: 311 LDEAVAQWCRDIFVAKDALLDKHIAEDSFSDQPLQDISRPIKSLV 355
            D+A AQWCRD+FVAKDALLDKH  ED+F +   QD  RPIKSL+
Sbjct: 263 TDDAAAQWCRDVFVAKDALLDKHKVEDTFGEGEFQDTGRPIKSLL 307


>GSVIVT01022423001 assembled CDS
          Length = 402

 Score =  343 bits (880), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 180/355 (50%), Positives = 224/355 (63%), Gaps = 49/355 (13%)

Query: 1   MAIPAAAVILPLGVLFFLSGFVVNLIQAICFVVIRPLSKNTYRKINRXXXXXXXXXXXXX 60
           MAIPAA  ILPLG+LF LSG VVNLIQ   ++++RP+SKN YR+IN+             
Sbjct: 1   MAIPAALAILPLGLLFILSGLVVNLIQVAFYILVRPMSKNLYRRINKVVVELLWLELIWL 60

Query: 61  XXXXXGIQIQLYT-DQETFRLMGKAILXLIRMFSASFSLMLLEYKYESSSEXXXXXXXXX 119
                G++++++  D ETF LMG                                     
Sbjct: 61  IDWWAGVKVEVFAADSETFELMG------------------------------------- 83

Query: 120 XXXXSGKEHALVICNHRSDIDWLVGWVLAQRSGCLGSALAVMKKSSKLLPVIGWSMWFSE 179
                 KEH+LVICNHRSDIDWLVGWVLAQRS CLGS LAVMKKS K LP+IGWSMWFS+
Sbjct: 84  ------KEHSLVICNHRSDIDWLVGWVLAQRSNCLGSTLAVMKKSLKFLPIIGWSMWFSD 137

Query: 180 YLFLERSWAKDESTLKSGLQRLKDFPRPFWLALFVEGTRFTQAKLLAAQEYAASAGLPIP 239
           Y+F+ERSWAKDE TLK GL+RL+DFPRPFWLALFVEGTRFT  KL AA++YA S+ LPIP
Sbjct: 138 YVFVERSWAKDERTLKWGLERLEDFPRPFWLALFVEGTRFTHTKLSAARQYAISSDLPIP 197

Query: 240 RNVLIPRTKGFVSAVSKYALFCPSHLXCNSSYPQKFTSTYNAQNVQGPILSVTLLQVHVH 299
            NVLIPRTKGFV+AV+    F P+      + P+   S    +     ILS     V+++
Sbjct: 198 SNVLIPRTKGFVAAVTHIRSFVPAVYDITVAVPRDQPSPTMLR-----ILSGQSSVVNLY 252

Query: 300 LKRHLMKDLPELDEAVAQWCRDIFVAKDALLDKHIAEDSFSDQPLQDISRPIKSL 354
           +KRH +++LP  D  +AQWC+D FVAKDALL++    ++F  Q   +I RP KSL
Sbjct: 253 IKRHTIQELPVTDAGIAQWCKDTFVAKDALLEQFFTTNTFGIQEYHNIGRPKKSL 307


>GSVIVT01009645001 assembled CDS
          Length = 379

 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 10/218 (4%)

Query: 127 EHALVICNHRSDIDWLVGWVLAQRSGCLGSALAVMKKSSKLLPVIGWSMWFSEYLFLERS 186
           +  L+I NHR+++DW+  W LA R GCLG    ++K S   LPV+GW     E++ +ER 
Sbjct: 98  QRVLLIANHRTEVDWMYFWNLAMRKGCLGYIKYILKSSLMKLPVLGWGFHLLEFISVERK 157

Query: 187 WAKDESTLKSGLQRLKDFPRPFWLALFVEGTRFTQAKLLAAQEYAASAGLPIPRNVLIPR 246
           W  DE  L+  L    +   P WLA+F EGT FT+ K   +Q++AA  GLP+  NVL+P+
Sbjct: 158 WEVDEPILRQKLSTFINPADPLWLAVFPEGTDFTEEKCKRSQKFAAENGLPVLNNVLLPK 217

Query: 247 TKGFVSA--VSKYALFCPSHLXCNSSYPQKFTSTYNAQNVQGPILSVTLLQVHVHLKRHL 304
           T+GF +   V + +L        ++ Y   F   +   N    +  V   +VH+H++R  
Sbjct: 218 TRGFCACLEVLRGSL--------DAVYDVSFAYKHQCPNFLDVLFGVDPSEVHMHVRRIP 269

Query: 305 MKDLPELDEAVAQWCRDIFVAKDALLDKHIAEDSFSDQ 342
           + ++PE +   A W    F  KD LL        F +Q
Sbjct: 270 VNEIPETESEAAAWLIHTFQIKDQLLSDFNYHGHFPNQ 307


>GSVIVT01031915001 assembled CDS
          Length = 203

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 34/172 (19%)

Query: 198 LQRLKDFPRPFWLALFVEGTRFTQAKLLAAQEYAASAGLPIPRNVLIPRTKGFVSAVSK- 256
           L   +D   P WLA+F EGT FT+ K + +Q+YAA  GLPI +NVL+P+TKGF + +   
Sbjct: 2   LSTFRDPRDPLWLAVFPEGTDFTEQKCIRSQKYAAEKGLPILKNVLLPKTKGFCACLEDL 61

Query: 257 -------------YALFCPSHLXCNSSYPQKFTSTYNAQNVQGPILSVTLLQVHVHLKRH 303
                        Y   CPS L                 NV G    V   +VH+H++R 
Sbjct: 62  RGSLDAVYDLTIGYKHQCPSFL----------------DNVFG----VDPSEVHMHVRRI 101

Query: 304 LMKDLPELDEAVAQWCRDIFVAKDALLDKHIAEDSFSDQPLQDISRPIKSLV 355
            + ++P  +  V  W  D F+ KD LL    ++  F  Q  +     +K LV
Sbjct: 102 PLNNIPTSENEVTTWLMDTFILKDQLLSNFYSQGGFPHQGTEGTLSTMKCLV 153