Jatropha Genome Database

JcCA0046021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046021.20 + phase: 0 
         (255 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001154001 assembled CDS                                       281   3e-76
GSVIVT01032392001 assembled CDS                                       108   2e-24
GSVIVT01035482001 assembled CDS                                       106   1e-23

>GSVIVT01001154001 assembled CDS
          Length = 332

 Score =  281 bits (718), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 161/289 (55%), Positives = 183/289 (63%), Gaps = 45/289 (15%)

Query: 1   MVSLRFPFLFSQPIRPSVISYATTSRSXXXXXXXXXXXXXXXXXXXXXXXIQNPTNTRDS 60
           MVSLRFPF FSQP  P    + +++                          QNP N    
Sbjct: 53  MVSLRFPFSFSQPPNP---RHRSSNSFSAAATAFSVAAASGAAVAAAVAVSQNPIN---P 106

Query: 61  FLQTALNFLLPNHSSLPWGSLSLADASPALVESKT------------------------- 95
           FLQ A NF   NHSS  W SLS+AD   ++ ESKT                         
Sbjct: 107 FLQNAFNF-FSNHSSPFWASLSIADNPSSVSESKTGVLFPSILNDSRQLLGTGLRKKSVL 165

Query: 96  ----------GVYADDDQVKNVLGEKYGKLSISELKENKEFKEDLMELDIFITVRLQIVY 145
                     GVYADD  +K +L EKYGKLS S   E K+  +DLME DI +TVRLQIVY
Sbjct: 166 GLKNIDVYAFGVYADDGDLKRLLSEKYGKLSFS---ERKDLSKDLMEADICMTVRLQIVY 222

Query: 146 SRLSIRSVRSAFEESVGSRLQKFGGPDNKELLQRFTSQFKDEYKIPRGSVIELSREKGHV 205
           SRLSIRSVR+AFEESVGSRLQK GG DNKELL RFTSQFKDEYKIP+GSVI+LSRE+GHV
Sbjct: 223 SRLSIRSVRNAFEESVGSRLQKLGGSDNKELLHRFTSQFKDEYKIPKGSVIDLSRERGHV 282

Query: 206 LRTTIDGKEAGSVQSKVLCRSILDLYIGEDPFDRQAKENIESKLASLLQ 254
           LRTTIDGKE G++QS++LCRSILDLYIGEDPFDR+AKE +E KL SLLQ
Sbjct: 283 LRTTIDGKEVGNIQSQLLCRSILDLYIGEDPFDRRAKEEVELKLVSLLQ 331


>GSVIVT01032392001 assembled CDS
          Length = 262

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 99/159 (62%), Gaps = 4/159 (2%)

Query: 96  GVYADDDQVKNVLGEKYGKLSISELKENKEFKEDLMELDIFITVRLQIVYSRLSIRSVRS 155
           G+YAD +++K++L  K GK   +  K  K+  + +++ D+++ VRL IVYS L++  VR 
Sbjct: 107 GIYADQEKLKDLLKSKIGK---APAKPTKDMYQVVIDSDLWMMVRLVIVYSGLTMSMVRK 163

Query: 156 AFEESVGSRLQKF-GGPDNKELLQRFTSQFKDEYKIPRGSVIELSREKGHVLRTTIDGKE 214
            F+E +G+ ++K  GG  N EL  +   +  D+ K+  GSVIE++R  G+ L T + G+ 
Sbjct: 164 NFDEGLGASIKKLTGGRRNDELSNKVMGEASDDIKLTSGSVIEITRLPGYTLETKVMGEV 223

Query: 215 AGSVQSKVLCRSILDLYIGEDPFDRQAKENIESKLASLL 253
              V+S++LCR+ + +Y+G+D FD+ A+E     L SL 
Sbjct: 224 VSKVESELLCRAYIHMYLGDDAFDKDAREKFGVSLLSLF 262


>GSVIVT01035482001 assembled CDS
          Length = 422

 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 87/159 (54%)

Query: 96  GVYADDDQVKNVLGEKYGKLSISELKENKEFKEDLMELDIFITVRLQIVYSRLSIRSVRS 155
           G Y     +   LG KY  + + EL + ++F EDL+  DI +TVRL +  + + I +VR 
Sbjct: 262 GFYVHPLLICEKLGPKYASIPVDELNKRQDFYEDLLREDINMTVRLVVNCNGMKINTVRD 321

Query: 156 AFEESVGSRLQKFGGPDNKELLQRFTSQFKDEYKIPRGSVIELSREKGHVLRTTIDGKEA 215
           AFE+S+ +RL K     + + L  F S F  +  +P G+ I+  R     L T I G+  
Sbjct: 322 AFEKSLRNRLLKTNPDTDYQCLTTFGSYFTQDIPLPAGTTIDFRRTADGQLITEIGGRTI 381

Query: 216 GSVQSKVLCRSILDLYIGEDPFDRQAKENIESKLASLLQ 254
           G V SK LCR+  D+YIG+ P   Q KE I   +A++++
Sbjct: 382 GVVHSKDLCRAFFDMYIGDVPVSHQTKEEIGRNVANIIR 420