Jatropha Genome Database

JcCA0045831.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045831.40 - phase: 0 
         (92 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008034001 assembled CDS                                       128   7e-31
GSVIVT01020027001 assembled CDS                                       124   7e-30
GSVIVT01011380001 assembled CDS                                       119   3e-28
GSVIVT01008030001 assembled CDS                                        74   1e-14

>GSVIVT01008034001 assembled CDS
          Length = 91

 Score =  128 bits (321), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)

Query: 17 ITDDQILDLVTKLQQLLPEIGNRRSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLA 76
          ITDDQI DLV+KLQQLLPEI  R SDKVSAAKVLQETCNYIR+L+REVDDLSERLSELLA
Sbjct: 16 ITDDQINDLVSKLQQLLPEIRGRHSDKVSAAKVLQETCNYIRSLNREVDDLSERLSELLA 75

Query: 77 TTDTAQAAIIRNLLMQ 92
          TTD+AQAAIIR+LL Q
Sbjct: 76 TTDSAQAAIIRSLLTQ 91


>GSVIVT01020027001 assembled CDS
          Length = 92

 Score =  124 bits (312), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 71/77 (92%), Gaps = 2/77 (2%)

Query: 17 ITDDQILDLVTKLQQLLPEIGNRRSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLA 76
          I+DDQI DLV+KLQQL+PEI NRRSDKVSA+KVLQETCNYIRNLHREVDDLS+RLS LLA
Sbjct: 16 ISDDQIADLVSKLQQLIPEIRNRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSALLA 75

Query: 77 TTDT--AQAAIIRNLLM 91
          +TDT   QAAIIR+LLM
Sbjct: 76 STDTDSDQAAIIRSLLM 92


>GSVIVT01011380001 assembled CDS
          Length = 90

 Score =  119 bits (298), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 69/75 (92%), Gaps = 2/75 (2%)

Query: 19 DDQILDLVTKLQQLLPEIGNRRSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLAT- 77
          DDQI++LV+KLQQLLPEI NRRSDKVSA+KVLQETCNYIR+LHREVDDLSERLS LLAT 
Sbjct: 16 DDQIIELVSKLQQLLPEIRNRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSRLLATV 75

Query: 78 -TDTAQAAIIRNLLM 91
            D+ +AAIIR+L+M
Sbjct: 76 DADSPEAAIIRSLIM 90


>GSVIVT01008030001 assembled CDS
          Length = 90

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 17 ITDDQILDLVTKLQQLLPEIGNRR-SDKVSAAKVLQETCNYIRNLHREVDDLSERLSELL 75
          +TDD+I DL+ KLQ LLP    RR S   SA ++L+ETC+YI+ LHREV DLSERLS+LL
Sbjct: 11 VTDDEINDLILKLQALLPHSNQRRTSTGASAWRILKETCSYIKRLHREVGDLSERLSQLL 70

Query: 76 ATTD 79
           + D
Sbjct: 71 DSLD 74