Jatropha Genome Database

JcCA0045831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045831.10 - phase: 0 
         (53 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020043001 assembled CDS                                        91   1e-19
GSVIVT01008037001 assembled CDS                                        45   5e-06

>GSVIVT01020043001 assembled CDS
          Length = 190

 Score = 90.5 bits (223), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/44 (97%), Positives = 43/44 (97%)

Query: 1  MVLVLALGDLHIPHRAPDLPAKFKSMLVPGKIQHIICTGNLCIK 44
          MVLVLALGDLHIPHRAPDLP KFKSMLVPGKIQHIICTGNLCIK
Sbjct: 1  MVLVLALGDLHIPHRAPDLPPKFKSMLVPGKIQHIICTGNLCIK 44


>GSVIVT01008037001 assembled CDS
          Length = 166

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/19 (100%), Positives = 19/19 (100%)

Query: 26 MLVPGKIQHIICTGNLCIK 44
          MLVPGKIQHIICTGNLCIK
Sbjct: 1  MLVPGKIQHIICTGNLCIK 19