Jatropha Genome Database

JcCA0045701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045701.10 - phase: 0 
         (247 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019020001 assembled CDS                                       208   2e-54
GSVIVT01009656001 assembled CDS                                       103   9e-23

>GSVIVT01019020001 assembled CDS
          Length = 201

 Score =  208 bits (529), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 126/193 (65%), Gaps = 32/193 (16%)

Query: 60  NPSTYLLPF-LRNIASIPANLPQLRISNSAPVTPPLSSPTNRSSKRKADWESFSNGPLNS 118
           +PS  L P  +    SIP +LP LRISNSAPVTPPLSSPT+R SKRK DWESFSNG LNS
Sbjct: 36  HPSQVLYPLTMPAHPSIPTSLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESFSNGSLNS 95

Query: 119 FRHPLFPVSAPSSPTRRQHLTPATIPECDESDASTVDSGRWVSFXXXXXXXXXXSPTFNL 178
           FRHPLF VSAPSSPTRR HLTPATIPECDESDASTVDSGRWVSF          SPTFNL
Sbjct: 96  FRHPLFAVSAPSSPTRRNHLTPATIPECDESDASTVDSGRWVSFQTVAPQAAPSSPTFNL 155

Query: 179 VKPIGQQSM----FQDGIDHXXXXXXXXXXXXXXXXXXXXXXXXXVKPWEGERIHEIGVD 234
           VKP+  +      F+ G                            VK WEGERIHE+GVD
Sbjct: 156 VKPVAMEGRPEFEFESG---------------------------RVKAWEGERIHEVGVD 188

Query: 235 DLELTLGSAKAHG 247
           +LELTLGS K  G
Sbjct: 189 ELELTLGSGKTRG 201


>GSVIVT01009656001 assembled CDS
          Length = 286

 Score =  103 bits (256), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 87/195 (44%), Gaps = 71/195 (36%)

Query: 57  FDANPSTYLLPFLRNIASIPANLPQLRISNSAPVTPPLSSPTNRSSKRKADWESFSNGPL 116
            DAN S  LLPFL    SIP++LP LRISNSAP                           
Sbjct: 127 MDANASLNLLPFL--YKSIPSSLPPLRISNSAP--------------------------- 157

Query: 117 NSFRHPLFPVSAPSSPTRRQHLTPATIPECDESDASTVDSGRWVSFXXXXXXXXXXSPTF 176
                               ++ PATIPE +ESD STV+SG+WVSF           PTF
Sbjct: 158 --------------------YIAPATIPEYEESDTSTVESGQWVSFQTFARHLAPLPPTF 197

Query: 177 NLVKPIGQ-----QSMFQDGIDHXXXXXXXXXXXXXXXXXXXXXXXXXVKPWEGERIHEI 231
           NL+KP+ Q     ++  + GI                           VKPWEGERIHEI
Sbjct: 198 NLMKPVAQKISPDEATKEKGI-----------------TPELEIGSAQVKPWEGERIHEI 240

Query: 232 GVDDLELTLGSAKAH 246
           G+DDLELTLGS K+ 
Sbjct: 241 GLDDLELTLGSGKSR 255