Jatropha Genome Database

JcCA0045571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045571.10 - phase: 0 
         (175 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031017001 assembled CDS                                       174   2e-44
GSVIVT01011870001 assembled CDS                                       153   3e-38

>GSVIVT01031017001 assembled CDS
          Length = 365

 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 95/116 (81%), Gaps = 9/116 (7%)

Query: 60  MGTHESGPSFVVENGVENGNPIGSHSISLKEWIFKNPNVLGDKVLDKWGCDLPFLFKVLS 119
           MGTHESGPSF++  G          S +LK WI +NPNVLGD+V++KWG DLPFLFKVLS
Sbjct: 1   MGTHESGPSFLIGEG---------KSRTLKSWISENPNVLGDEVVEKWGSDLPFLFKVLS 51

Query: 120 VAKALSIQAHPDKELAKMLHKLHPDVYKDDNHKPEMALAITEFQALCGFISLKVLR 175
           VAKALSIQAHPDKELA+ LHKL P VYKDDNHKPEMALAITEFQALCGF+SL  L+
Sbjct: 52  VAKALSIQAHPDKELARTLHKLQPHVYKDDNHKPEMALAITEFQALCGFVSLGELK 107


>GSVIVT01011870001 assembled CDS
          Length = 400

 Score =  153 bits (387), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/119 (64%), Positives = 95/119 (79%), Gaps = 6/119 (5%)

Query: 57  ELWMGTHESGPSFVVENGVENGNPIGSHSISLKEWIFKNPNVLGDKVLDKWGCDLPFLFK 116
           E+   THESGP+FV E+  E G      +++LK WI +NPNVLG++VL+KWGCDLPFLFK
Sbjct: 30  EILDRTHESGPTFVNESR-ECG-----EALTLKSWISRNPNVLGNEVLNKWGCDLPFLFK 83

Query: 117 VLSVAKALSIQAHPDKELAKMLHKLHPDVYKDDNHKPEMALAITEFQALCGFISLKVLR 175
           VLSV KALS QAHPDKELA+ LH+L P++Y + NHKPEMALA+TEF+AL GFI LK L+
Sbjct: 84  VLSVGKALSRQAHPDKELAETLHELQPNIYMNGNHKPEMALALTEFEALHGFIGLKELK 142