Jatropha Genome Database

JcCA0045271.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045271.30 - phase: 0 /partial
         (122 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019052001 assembled CDS                                       143   2e-35
GSVIVT01027460001 assembled CDS                                        73   4e-14
GSVIVT01001045001 assembled CDS                                        72   5e-14
GSVIVT01030481001 assembled CDS                                        69   4e-13
GSVIVT01035494001 assembled CDS                                        69   5e-13
GSVIVT01037698001 assembled CDS                                        59   4e-10

>GSVIVT01019052001 assembled CDS
          Length = 1340

 Score =  143 bits (361), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 92/113 (81%), Gaps = 2/113 (1%)

Query: 1    VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQKNNFEK 60
            VLGDVIESLAGAI VDS YNKE VF+SIRPLLEPLITPET++LHP REL ELCQK +++ 
Sbjct: 1225 VLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARELGELCQKEHYD- 1283

Query: 61   SKSVVQRKNGMYSVTEEVVAHGEIFKHTSEAADKKTAKRVASKEVLRALKDTI 113
             K VV  +NG  SVT EV A+G   KHTS  +DK+TA ++ASKEVL++LK++I
Sbjct: 1284 IKRVVVSQNGKASVTIEVEANGAKHKHTS-TSDKRTATKLASKEVLKSLKESI 1335


>GSVIVT01027460001 assembled CDS
          Length = 227

 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 65/107 (60%), Gaps = 4/107 (3%)

Query: 5   VIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQKNNFEKSKSV 64
           + ES+AGAI++DSG +   V++  +PLL P++TPET+ +HPVREL E CQ+   E  +  
Sbjct: 23  ICESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQ-QAEGLEYK 81

Query: 65  VQRKNGMYSVTEEVVAHGEIFKHTSEAADKKTAKRVASKEVLRALKD 111
             R   + +V  EV   G +    ++   KK A+++A++  L  LK+
Sbjct: 82  ATRSGNLATV--EVFIDG-VQIGIAQNPQKKMAQKLAARNALVVLKE 125


>GSVIVT01001045001 assembled CDS
          Length = 1623

 Score = 72.0 bits (175), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 70/118 (59%), Gaps = 1/118 (0%)

Query: 2    LGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQKNNFEKS 61
            LGD++ES  GAI +D G++    +  +  +L+ +++   ++L+P+REL ELCQ +N++  
Sbjct: 1327 LGDLVESCMGAILLDKGFDLNHAWNIMLSILDRIMSFSDLQLNPIRELQELCQHHNWDL- 1385

Query: 62   KSVVQRKNGMYSVTEEVVAHGEIFKHTSEAADKKTAKRVASKEVLRALKDTIYRISAE 119
            +    ++ G + V  +V         ++  A++K A+R+AS ++ + LKD  Y + +E
Sbjct: 1386 QFPTSKQGGTFLVEAKVSGDDICTTASATNANRKDARRIASNQLFKKLKDQGYMLHSE 1443


>GSVIVT01030481001 assembled CDS
          Length = 287

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

Query: 1   VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQKNNFE- 59
           VL DV+ES  GA++VD   + + V++  + LLEP+I PET+++HPV ELNE CQK   + 
Sbjct: 154 VLADVVESTIGAVFVDCNCSVDTVWKVFKGLLEPMIVPETLKVHPVTELNERCQKRGLKL 213

Query: 60  KSKSVVQRKNGMYSVTEEVVA 80
           + K   QR+  +    E+  A
Sbjct: 214 EFKDSWQRRGDIDFYIEDYFA 234


>GSVIVT01035494001 assembled CDS
          Length = 1688

 Score = 68.9 bits (167), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 40/52 (76%)

Query: 2    LGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELC 53
            LGD++ES+AGAI +D+  N   V+R  +PLL P++TP+ + L P+RELNELC
Sbjct: 1395 LGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLELPPLRELNELC 1446


>GSVIVT01037698001 assembled CDS
          Length = 337

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 10/117 (8%)

Query: 2   LGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRL--HPVRELNELCQKNNFE 59
           L D++ES+A AIYVD  ++ + ++   R LLEP++T E ++    PV  L ELCQK+   
Sbjct: 131 LADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQPQPVTLLYELCQKDG-- 188

Query: 60  KSKSVVQRKNGMYSVTEEVVAHGEIFKHTSEAADKKTAKRVASKEVLR----ALKDT 112
           K   +   + G  ++    V  G  F  +  + +K+ AK  A+KE L+     LKDT
Sbjct: 189 KHVDIKHWRKGSKNIASVYV--GGKFIASGSSDEKEIAKLNAAKEALQKLSSKLKDT 243