Jatropha Genome Database

JcCA0045271.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045271.20 - phase: 0 
         (379 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019055001 assembled CDS                                       670   0.0  
GSVIVT01033556001 assembled CDS                                       263   7e-71
GSVIVT01031232001 assembled CDS                                       257   8e-69
GSVIVT01010979001 assembled CDS                                       161   5e-40
GSVIVT01028263001 assembled CDS                                       137   6e-33
GSVIVT01037090001 assembled CDS                                        49   3e-06

>GSVIVT01019055001 assembled CDS
          Length = 451

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/374 (87%), Positives = 340/374 (90%)

Query: 1   MQDFYSLRRDVEAASERVEEIIASXXXXXXXXXXXXXXXXXXDSSLWDDRARAQEILSAL 60
           MQDFY+LRRDVEA SER EEI AS                  DSS WDDRA+AQE L AL
Sbjct: 75  MQDFYTLRRDVEAISERAEEIRASAGLQQLEEELAALEMKAADSSFWDDRAKAQETLLAL 134

Query: 61  TDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATAIVKELNKSLDRFELTQL 120
           TDVKDKIKLLT+FKT VEDAETIVKLTEEMDS D GLLEEA  I+KELNK+LDRFELTQL
Sbjct: 135 TDVKDKIKLLTDFKTQVEDAETIVKLTEEMDSIDTGLLEEAANIIKELNKALDRFELTQL 194

Query: 121 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGEEAGIKS 180
           LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMY+RWGEKQRYKTRVVEKS GEEAGIKS
Sbjct: 195 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSMGEEAGIKS 254

Query: 181 VTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEE 240
            TIE+EGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEE
Sbjct: 255 ATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEE 314

Query: 241 DLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV 300
           DLEI+FSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV
Sbjct: 315 DLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV 374

Query: 301 IAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDINSVMDGELEPF 360
           IA EQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG+ETSDI SVMDGELEPF
Sbjct: 375 IAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETSDITSVMDGELEPF 434

Query: 361 IKAYLKYKYSMAMS 374
           IKAYLK+K+SM +S
Sbjct: 435 IKAYLKFKFSMTLS 448


>GSVIVT01033556001 assembled CDS
          Length = 414

 Score =  263 bits (673), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 140/329 (42%), Positives = 204/329 (62%), Gaps = 5/329 (1%)

Query: 45  SLWDDRARAQEILSALTDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATAI 104
           +LWDD  ++ EIL  L D    +  L +     E+A+ I +L E MD+ + GL E+A   
Sbjct: 89  NLWDDVTKSNEILGKLADSSKVVDTLKDLTYKAEEAKLITQLVE-MDAINHGLFEQAYNA 147

Query: 105 VKELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYK 164
             +++K L ++E+++LL G +D EGA ++I AG  G  ++ WA+ LL MY +W EKQ YK
Sbjct: 148 SVDVSKFLYQYEMSKLLRGQFDMEGACLTIKAGPRGIYSEIWAEQLLSMYTKWAEKQGYK 207

Query: 165 TRVVEKSPGEEAGIKSVTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEV 224
            RVVEK   +  GIKS TIE E  Y YGYLSGE+G H ++R S  +   L +T  + V+V
Sbjct: 208 GRVVEKYASKNGGIKSATIEFESEYGYGYLSGERGVHHMIRSSD-DESILHETGSAVVDV 266

Query: 225 MPLLPEESMDVEIPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQL 284
           +PL  E + D++I + DL I+     G       +   AV I HIPTG++V+ + ERS  
Sbjct: 267 IPLFLETAPDLQIDDGDLRISSPSCHGV---EQGRTGHAVCIQHIPTGISVQSSGERSHF 323

Query: 285 ANKIKALSRLKAKLLVIAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGF 344
           ANK++AL+RLKAKL+V A+EQ   E+  I+ +A+   W Q+ R YVFHP KLV+DV+T  
Sbjct: 324 ANKMRALNRLKAKLVVTAMEQGIPEVGGIKREAIADMWKQETRRYVFHPNKLVQDVKTDI 383

Query: 345 ETSDINSVMDGELEPFIKAYLKYKYSMAM 373
           +  D+NSV+DG +EP I A +  + +  M
Sbjct: 384 QLPDLNSVLDGNIEPLIGANISMRQASDM 412


>GSVIVT01031232001 assembled CDS
          Length = 472

 Score =  257 bits (656), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 133/320 (41%), Positives = 194/320 (60%), Gaps = 2/320 (0%)

Query: 46  LWDDRARAQEILSALTDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATAIV 105
           LWD+   A +I      +  K+K +   +  + +   +VKL  E    D  L  E+   +
Sbjct: 142 LWDNPVHAGKISREHGMLMGKMKGVKNLEQELLEHIDMVKLARE--ENDPELESESLKAL 199

Query: 106 KELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKT 165
             + ++    EL  LL+G +D     I + AGAGGT++ DWA M+++MY  W +++ Y  
Sbjct: 200 LGMRRNSKEKELEALLAGDHDSCSCYIEVQAGAGGTESMDWAAMVMQMYKMWAQRRGYGV 259

Query: 166 RVVEKSPGEEAGIKSVTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVM 225
            VV++ PGE AGIK  TI+++G Y++GY   E G HR+VR SPF++   R TSF+ V V+
Sbjct: 260 TVVDEMPGETAGIKRATIKVDGEYSFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVI 319

Query: 226 PLLPEESMDVEIPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 285
           P+L + S  V+I E DL I   RAGG GGQ+VN  E+AVRI HIPTGVT  C  ERSQ  
Sbjct: 320 PILGDASSHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQ 379

Query: 286 NKIKALSRLKAKLLVIAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFE 345
           NK  A++ L+++L  + + ++A    Q         WG QIR YV HPY++VKD+RT +E
Sbjct: 380 NKASAMAVLQSRLDQLEISRQAQINAQHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYE 439

Query: 346 TSDINSVMDGELEPFIKAYL 365
            SD +SV++G+L+ FI +YL
Sbjct: 440 VSDPDSVLEGDLDGFILSYL 459


>GSVIVT01010979001 assembled CDS
          Length = 411

 Score =  161 bits (407), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 175/332 (52%), Gaps = 18/332 (5%)

Query: 43  DSSLWDDRARAQEILSALTDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLE--- 99
           D  +  + +  Q++  ++ ++ + +     FK   +  E    L +E D  DA + E   
Sbjct: 69  DPDIVSNPSEYQKLAQSMAELDEVVSTFKRFKDCEKQLEEAKALAKE-DGIDADMAEMIA 127

Query: 100 -EATAIVKELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWG 158
            E   +  +L +  +  ++  L S P D    ++ + AG GG +A  WA  L+RMY ++ 
Sbjct: 128 YEIGTLTNQLKELEENIKVLLLPSDPLDSRNILLEVRAGTGGDEAGIWAGDLVRMYQKYS 187

Query: 159 EKQRYKTRVVEKSPGEEAGIKSVTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 218
           E+  +K   V  S  E+ G K+  +E++G   Y  L  E G HR+ R      +G   TS
Sbjct: 188 ERNSWKYAPVSSSEAEKGGFKTYVLEVKGNCVYSKLKYESGVHRVQRVPQTETQGRVHTS 247

Query: 219 FSGVEVMPLLPEESMDVEIPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCT 278
            + V +MP   E  ++V I  +D+E+T +R+GG GGQNVNKVETAV + H PTG+ + CT
Sbjct: 248 TATVAIMPEADE--VEVVIDPKDIELTTARSGGAGGQNVNKVETAVDLFHKPTGIRIFCT 305

Query: 279 EERSQLANKIKALSRLKAKLLVIAVEQRASEIKQIR----GDAVKAEWGQQIRNYVFHPY 334
           EER+QL N+ +AL  L+AKL  I V ++   I+  R    G   +AE   +IR Y +   
Sbjct: 306 EERTQLQNRSRALQLLRAKLYEIKVREQQELIRNQRKSQVGTGARAE---KIRTYNYKDN 362

Query: 335 KLVKD-VRTGFETSDINSVMDGELEPFIKAYL 365
           ++    ++  FE   + S +DG++E  +++ +
Sbjct: 363 RVTDHRLKMNFE---LTSFLDGDIETAVQSCV 391


>GSVIVT01028263001 assembled CDS
          Length = 392

 Score =  137 bits (346), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/242 (36%), Positives = 128/242 (52%), Gaps = 5/242 (2%)

Query: 126 DKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGEEAGIKSVTIEI 185
           D+   ++ + AG GG +A  +A  + +MY ++ +K  +K  VV+ +  +  G K  +  I
Sbjct: 132 DERDCILEVRAGTGGEEASLFAMDIFKMYEKYSQKNGWKFEVVDITESDLKGYKEASGAI 191

Query: 186 EGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEEDLEIT 245
            G   YG L  E G HR+ R       G   TS   V ++P   E  +DV++  EDL I 
Sbjct: 192 SGSGVYGKLKFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADE--VDVQLRNEDLRID 249

Query: 246 FSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAVEQ 305
             R+GG GGQ+ N   +AVRITHIP+G+TV   +ERSQ  NK KAL  L AKL  I   +
Sbjct: 250 TYRSGGSGGQHANTTNSAVRITHIPSGMTVAIQDERSQHMNKAKALKVLCAKLYEIERSR 309

Query: 306 RASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLVKDVRTGFETSDINSVMDGE-LEPFIKA 363
              +  ++R + +   +  ++IR Y F P   V D R G     +N VM GE L+ FI A
Sbjct: 310 IQKDRSKLRMEQIGSGDRSERIRTYNF-PQGRVTDHRVGITHHSVNDVMQGENLDVFIDA 368

Query: 364 YL 365
            L
Sbjct: 369 LL 370


>GSVIVT01037090001 assembled CDS
          Length = 224

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 33/48 (68%)

Query: 240 EDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANK 287
           +  E++  ++ G GGQ+ NK E+AVR+ H+PTG+  +  E+RSQ  N+
Sbjct: 62  KQCEMSTFKSSGPGGQHRNKRESAVRLKHLPTGIIAQAVEDRSQHKNR 109