Jatropha Genome Database

JcCA0045271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045271.10 + phase: 2 /partial
         (205 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015446001 assembled CDS                                       181   2e-46
GSVIVT01015447001 assembled CDS                                       160   4e-40
GSVIVT01008730001 assembled CDS                                        94   3e-20
GSVIVT01034280001 assembled CDS                                        47   6e-06

>GSVIVT01015446001 assembled CDS
          Length = 180

 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 123/176 (69%), Gaps = 9/176 (5%)

Query: 35  MRILNIGGGFRANPLFDEIVKTVNDSIQEFFSNDMTS--LTVIAEPGRYFAETPFILVTN 92
           M +L+IGGGF+ +P F EI   + ++I ++F +  TS  L ++AEPGR+FAET F LV+N
Sbjct: 1   MHVLDIGGGFQESPTFHEIAAVIKEAINDYFPSSETSEDLKIMAEPGRFFAETAFTLVSN 60

Query: 93  VIGKRMRGEEIDYWIDDGIHGSFKLAANDPASLMYKVLLQNEDGAGPIT-------SSTI 145
           +IGKR+RGE+ +YWIDDGI+GSF L A D +S+M K LL   +             SST+
Sbjct: 61  IIGKRVRGEKREYWIDDGIYGSFNLPAYDKSSMMVKPLLGGSEWMNKAKFCSTAKFSSTV 120

Query: 146 FGPTCDSLDVVISGCELSELQVNDLIVFYNMGAYTTSFASKFNGFNRFDLPTYLAF 201
           FGPTCDS D+V++  +L EL +ND++VFYNMGAYT S  ++FNGF+   + T+L +
Sbjct: 121 FGPTCDSTDMVVAESQLPELHMNDVLVFYNMGAYTASAGTRFNGFDISSISTFLTY 176


>GSVIVT01015447001 assembled CDS
          Length = 370

 Score =  160 bits (405), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 127/217 (58%), Gaps = 30/217 (13%)

Query: 15  SAIATARFAFDTAIKLEMPAMRILNIGGG--FRANPLFDE----------IVKTVNDSIQ 62
           +A+A+    FD A + E+  +  L +G      ANP   E          +  T  DS+Q
Sbjct: 149 TALASLGANFDCASRAEIETVMALGVGAQQIVYANPCKGESHLKYAASVGVNLTTFDSMQ 208

Query: 63  EF-----------------FSNDMTSLTVIAEPGRYFAETPFILVTNVIGKRMRGEEIDY 105
           E                    ND   L ++AEPGR+FAET F LV+N+IGKR+RGE+ +Y
Sbjct: 209 EIDKIIMWHKKCDLLLRIKAPNDEKDLKIMAEPGRFFAETAFTLVSNIIGKRVRGEKREY 268

Query: 106 WIDDGIHGSFKLAANDPASLMYKVLLQNEDGAGPIT-SSTIFGPTCDSLDVVISGCELSE 164
           WIDDGI+GSF L A D +S+M K LL   +       SST+FGPTCDS+D+V++  +L E
Sbjct: 269 WIDDGIYGSFNLPAYDKSSMMVKPLLGGSEWMNKAKFSSTVFGPTCDSMDMVVAESQLPE 328

Query: 165 LQVNDLIVFYNMGAYTTSFASKFNGFNRFDLPTYLAF 201
           L +ND++VFYNMGAYT S  ++FNGF+   + T+L +
Sbjct: 329 LHMNDVLVFYNMGAYTASAGTRFNGFDISSISTFLTY 365


>GSVIVT01008730001 assembled CDS
          Length = 230

 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 56/78 (71%), Gaps = 1/78 (1%)

Query: 24  FDTAIKLEMPAMRILNIGGGFRANPLFDEIVKTVNDSIQEFFSNDMTSLTVIAEPGRYFA 83
           FDTA +L +P M +LNIGGGF + P FD+    +  S+Q +F N+   LT+I EPGRYFA
Sbjct: 80  FDTASRLGLPRMHVLNIGGGFTSGPHFDDATSAIKSSLQAYFPNE-HGLTIIGEPGRYFA 138

Query: 84  ETPFILVTNVIGKRMRGE 101
           E+ F LVTN+IGKR+R E
Sbjct: 139 ESAFTLVTNIIGKRVRSE 156


>GSVIVT01034280001 assembled CDS
          Length = 399

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 17/195 (8%)

Query: 2   HVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMRILNIGGGFRAN--------PLFDEI 53
           H+GS  +   ++  A A     +   I+ +   +  LNIGGG   +        P   ++
Sbjct: 179 HLGSTITKVDIFRDA-AVLMVNYIDEIRAQGFEISYLNIGGGLGIDYYHAGAVLPTPRDL 237

Query: 54  VKTVNDSIQEFFSNDMTSLTVIAEPGRYFAETPFILVTNVIGKRMRGEEIDYWIDDGIHG 113
           + TV + +    S D   L +I EPGR        LV  VIG +  G +    ID  +  
Sbjct: 238 IDTVRELV---LSRD---LNLIIEPGRSLIANTCCLVNRVIGVKTNGTKNFVVIDGSMAE 291

Query: 114 SFKLAANDPASLMYKVLLQNEDGAGPITSSTIFGPTCDSLDVVISGCELSELQVNDLIVF 173
             + +  D  +  +  L+        I++  + GP C+S D +    EL        +V 
Sbjct: 292 LIRPSLYD--AYQHIELVSPPPSDAQISTFDVVGPVCESADFLGKDRELPTPPRGAGLVV 349

Query: 174 YNMGAYTTSFASKFN 188
           ++ GAY  S AS +N
Sbjct: 350 HDAGAYCMSMASSYN 364