Jatropha Genome Database

JcCA0045261.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045261.20 + phase: 0 
         (134 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029260001 assembled CDS                                       180   2e-46
GSVIVT01018843001 assembled CDS                                       130   3e-31
GSVIVT01032438001 assembled CDS                                        96   7e-21
GSVIVT01007719001 assembled CDS                                        95   8e-21
GSVIVT01028475001 assembled CDS                                        94   2e-20
GSVIVT01017786001 assembled CDS                                        67   2e-12
GSVIVT01021531001 assembled CDS                                        63   4e-11
GSVIVT01000932001 assembled CDS                                        63   5e-11
GSVIVT01017787001 assembled CDS                                        60   3e-10
GSVIVT01032936001 assembled CDS                                        51   2e-07

>GSVIVT01029260001 assembled CDS
          Length = 136

 Score =  180 bits (456), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 94/100 (94%)

Query: 34  FVKKTISSHKIVIFSKSYCPYCKRAKAVFKELNKVPHVVELDERDDGQNIQDALSKVVGR 93
           FVKKTISSHKI IFSKSYCPYCKRAKAVFKELN+VP+VVELD+R+DG NIQDALS +VGR
Sbjct: 35  FVKKTISSHKIAIFSKSYCPYCKRAKAVFKELNQVPYVVELDQREDGWNIQDALSGMVGR 94

Query: 94  RTVPQVFIDGKHIGGSDDTVEAYTSGELAKLLGIAAKNDD 133
           RTVPQVFI+GKHIGGSDDTVEAY SG+LAKLLGIA ++ D
Sbjct: 95  RTVPQVFINGKHIGGSDDTVEAYQSGDLAKLLGIAEEDSD 134


>GSVIVT01018843001 assembled CDS
          Length = 128

 Score =  130 bits (326), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 73/96 (76%)

Query: 33  AFVKKTISSHKIVIFSKSYCPYCKRAKAVFKELNKVPHVVELDERDDGQNIQDALSKVVG 92
           AFV+ TI ++KI IFSKSYCPYC RAK +F EL++ P VVELD RDDG  IQ+ L  +VG
Sbjct: 33  AFVQNTIYANKIAIFSKSYCPYCLRAKRIFSELHEEPFVVELDHRDDGTQIQNVLLDLVG 92

Query: 93  RRTVPQVFIDGKHIGGSDDTVEAYTSGELAKLLGIA 128
           R TVPQ+F++GKHIGGSDD   A  SG+L K LG +
Sbjct: 93  RSTVPQIFVNGKHIGGSDDLRNAVLSGQLQKQLGTS 128


>GSVIVT01032438001 assembled CDS
          Length = 114

 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 58/90 (64%)

Query: 36  KKTISSHKIVIFSKSYCPYCKRAKAVFKELNKVPHVVELDERDDGQNIQDALSKVVGRRT 95
           ++ +SS+ +V+FSK+YCP+C   K +  EL     VVELD   DG ++Q AL+   G+RT
Sbjct: 7   QEMVSSNPVVVFSKTYCPFCVSVKKLLSELGATFKVVELDTESDGADLQSALAGWTGQRT 66

Query: 96  VPQVFIDGKHIGGSDDTVEAYTSGELAKLL 125
           VP VFI GKHIGG D     ++ G+L  LL
Sbjct: 67  VPNVFIGGKHIGGCDTATALHSDGKLVPLL 96


>GSVIVT01007719001 assembled CDS
          Length = 109

 Score = 95.1 bits (235), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 58/93 (62%)

Query: 33  AFVKKTISSHKIVIFSKSYCPYCKRAKAVFKELNKVPHVVELDERDDGQNIQDALSKVVG 92
           A  K+ +SS  +V+FSK+YC YCKR K +  +L      +ELD+  DG  IQ AL +  G
Sbjct: 4   AKAKEIVSSTPVVVFSKTYCGYCKRVKQLLSQLKATHKTIELDQESDGAEIQSALREWTG 63

Query: 93  RRTVPQVFIDGKHIGGSDDTVEAYTSGELAKLL 125
           + TVP VFI GKH+GG D  +E +  G+L  LL
Sbjct: 64  QSTVPNVFIGGKHMGGCDSVMEKHQEGKLVPLL 96


>GSVIVT01028475001 assembled CDS
          Length = 114

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 61/96 (63%), Gaps = 1/96 (1%)

Query: 35  VKKTISSHKIVIFSKSYCPYCKRAKAVFKELNKVPHVVELDER-DDGQNIQDALSKVVGR 93
           VKKT+  + +V++SK++C Y    K++FK L   P V+ELDE    G  +Q  L ++ G+
Sbjct: 13  VKKTVDENPVVVYSKTWCSYSSEVKSLFKRLGVEPFVIELDEMGPQGPQLQKVLERLTGQ 72

Query: 94  RTVPQVFIDGKHIGGSDDTVEAYTSGELAKLLGIAA 129
            TVP VFI GKHIGG  DTV+ Y  GEL  LL  A+
Sbjct: 73  HTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEAS 108


>GSVIVT01017786001 assembled CDS
          Length = 103

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 51/91 (56%)

Query: 35  VKKTISSHKIVIFSKSYCPYCKRAKAVFKELNKVPHVVELDERDDGQNIQDALSKVVGRR 94
           V +  S   +VIFSKS C  C   K +F +    P V ELDE   G+ I+ AL+++    
Sbjct: 5   VARLASERPVVIFSKSSCCMCHTIKTLFSDFGVNPAVHELDEMPRGREIEQALARLGCNP 64

Query: 95  TVPQVFIDGKHIGGSDDTVEAYTSGELAKLL 125
           TVP VFI G+ +GG+++ +  + +  L  +L
Sbjct: 65  TVPTVFIGGERVGGTNEIMTLHLNRSLIPML 95


>GSVIVT01021531001 assembled CDS
          Length = 179

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 3/107 (2%)

Query: 26  ANDTTESAF--VKKTISSHKIVIFSKSYCPYCKRAKAVFKELNKVPHVVELDERDDGQNI 83
           A++  E+ +  V++  SS+ +V+FS S C  C   K +   L   P +VELD+   G  +
Sbjct: 69  AHEKPETTYEAVRRLGSSNAVVVFSLSGCCMCHVMKQLLFGLGVGPTIVELDKEKYGSEM 128

Query: 84  QDALSKVV-GRRTVPQVFIDGKHIGGSDDTVEAYTSGELAKLLGIAA 129
           Q  L ++  G+ +VP VF+ GK +GG +  +  + +G L  LL  A 
Sbjct: 129 QSVLYQLAGGQHSVPAVFVGGKFLGGIETLMSCHINGTLVPLLKAAG 175


>GSVIVT01000932001 assembled CDS
          Length = 107

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 35  VKKTISSHKIVIFSKSYCPYCKRAKAVFKELNKVPHVVELDERDDGQNIQDALSKVVGRR 94
           V +  S + +VIFS S C  C   K +F  +   P V ELD+   G+ I+ AL +++G  
Sbjct: 8   VARLASENAVVIFSLSSCCMCHAVKRLFCGMGVNPTVYELDQDPRGKEIERALMRLLGNS 67

Query: 95  -TVPQVFIDGKHIGGSDDTVEAYTSGELAKLL 125
             VP VFI GK +G  D  + ++ +G L  LL
Sbjct: 68  PAVPVVFIGGKLVGSMDSVMASHINGTLVPLL 99


>GSVIVT01017787001 assembled CDS
          Length = 102

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%)

Query: 35  VKKTISSHKIVIFSKSYCPYCKRAKAVFKELNKVPHVVELDERDDGQNIQDALSKVVGRR 94
           V K  S   +VIFSKS C      K +F E    P + ELDE   G+ ++ AL ++    
Sbjct: 4   VGKLASQKAVVIFSKSSCCMSHAIKRLFYEQGVSPAIHELDEDSRGKEMEWALMRLGCNP 63

Query: 95  TVPQVFIDGKHIGGSDDTVEAYTSGELAKLL 125
           +VP VFI GK +G ++  +  + +G L K+L
Sbjct: 64  SVPAVFIGGKFVGSANTVMTLHLNGSLKKML 94


>GSVIVT01032936001 assembled CDS
          Length = 183

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 37  KTISSHKIVIFSKSY--CPYCKRAKAVFKELNKVPHVVELDERDDGQNIQDALSKVVGRR 94
           K ++S+K+V+F K     P C  +  V + LN +    E     + + ++  L +     
Sbjct: 87  KVVTSNKVVLFMKGTKEFPQCGFSNTVVQILNSLNVPFETINILENEILRQGLKEYSNWP 146

Query: 95  TVPQVFIDGKHIGGSDDTVEAYTSGELAKLL 125
           T PQ++I+G+  GG D TV+AY SG+L + L
Sbjct: 147 TFPQLYIEGEFFGGCDITVDAYNSGQLQEQL 177