Jatropha Genome Database

JcCA0045261.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045261.10 + phase: 0 /TE/partial
         (256 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016108001 assembled CDS                                        47   9e-06

>GSVIVT01016108001 assembled CDS
          Length = 227

 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 76/187 (40%), Gaps = 6/187 (3%)

Query: 16  NFALWQVQVKDVLIQSGLHKVLKGKPVXXXXXXXXXXXXXXXXXXXXXXXWEELDIKAAS 75
           N+ LW+ Q+ +++I +GL +++ GK                         W+  +     
Sbjct: 37  NYLLWRTQMLNIIIANGLEEMIHGK-----IPAPSRFLGDSENINPEYSIWQCQNRLVMC 91

Query: 76  QIRMCLAKNVLANVLGXXXXXXXXXXXXXXYQGKNISNMLYLKEQFHTLKMAEGTKLSDH 135
            I   L K V+A ++G              +   + + ++ L  Q  T K   G  + ++
Sbjct: 92  WIYSSLTKGVMAQIIGLDTASEIWTALEKIFSAASKARIMQLHFQLQTTKKG-GLSMMEY 150

Query: 136 LSVLNSIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVVYADVVSKLLT 195
           L  + SIV  L  +G    ++D+ L L+  L + Y      +  G + +   ++ S LLT
Sbjct: 151 LLKIKSIVDNLLAIGENITEQDRILYLLAGLGAKYNSFVITVTSGHEPLSLEEIHSMLLT 210

Query: 196 EERRLNE 202
            E RL +
Sbjct: 211 HENRLEQ 217